Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g627 ATGCTTTCGGGAGTGAAGTTTATACCTCGGGGTCGGATTGATAGAGCACAAGATGAGAAATCGAGTGATTCTACAAAAGAGAGGAAGAAATCAGGTAATAGAAAAGAAAAGAATAGGAAAAAAAAGAAGATTTCTAGGTACAGTAGTTCAGATGACGAAGAGATAGAGAAAATTAGAAAAGGGTCCAAAAAGAATAAGAAGTGGTACTCGTCAGAGGAGTATACGTCCAGTTCAAGTGAAAGAGAAAGTGAAAGCAGTTCTGAGCGAGACGGGAAGAAGAGTCGAAGAAGGAGAAATGAGAAGAAAGCTTATGGGGATAGGTCAAGGGATGAAGCTAGTGACAGGTCAAAAAAGAGACCACAAACTATGAGAGAACTTGATTCATCTGAGGATTATTCTTCATCTGATTTAGAAGATGAAGGCGGGGATGGTTTTTCTGGTAGAAAAGATAGGAATCGCAGAAGTGGGAAAGAAGAAAGAACAATGAGTAAGAAAAGAGGGACTAAAAAGGACGTTGCAGGGGAGGAGTCACTTGATGATGCTGGAGGATCTCATTCCTTGACTGACAAGGAGATTGTGAGGAAAGAAATGGGACTGGAATGGATGCTTCGACCCAGTGATAATAGTGAGCGAAAGCCTGCAACAACATCTGACCAGGTGCCAGAGGAGCCTCAGGCAGATGAGACAATGAAAGTGAATCCCAGAGAATTAAACCCCTATCTAAAGGATGATGGGAATGGTTATCCAGAAGAAATGGATGGGACAAAGGTTGGTGGGAATCGACTGTTGTCTTCTTCAGTTGTTGGAGATGGAGGTGCAAGCTGGAGAATGAAAGCCTTGAAGCGTGCACAAGAGCAAGCAGCTCGTGAAGGACGAAAGTTTGACGAGGTTGTTGAAGAACGATGGGGTTCTCTTGGTCAGTTGACTGTTTCTTTGGCATCTCATGCAGCTGCCCCATCTCGTGCTCATCTGCATGCCATAAAAAGTAGAAAGAAGGGGCTAACACAGGAACAGCAAACACCCATTCAAGATTACCAGAGGGATTCTGAAAAGAATTCTGGCCGAGAGTACTTGAAGGATGTGTCTGTCCGTAATCCTGAAATGAAAGCACCTAAAGTTCACAACTCTTTATCCTGGGGAAAGCGGAAAGGTCAAAATGTGTCTACTAAGGATGTTGGCCTTATCTCTGATGCAGTTGCCAGCTTAAATAAGTTTGCCAATGATGGAAGCTTTATGCATGAAGTTGTGCATCGGCAGAACATTGATACTGGTGGTCCTCTTGGCTCTTCATATGCAAATTGCGAGGGGGATGTTATGTCAAAATCAGTTTCTTTAGAAACAAACCAACCTGGTGAGGCTAGTAAGCAGGCATTGAGTGCAAACCAGTTGGCAGCAAAGGCTTTGCGGCTACGTATGGAAGGAAAGCATAAAGAAGCGGAGGAGCTTTTGAAACAAACAGAGATCATCAAAGCGAAGCAGGGCACTGAGGAAAATACTGGGGAGCGAAGTGGGGGAGGCACAAGCAGATATGTAATGCATGATTCATCTGTTCGGAGAAAGAGGAAGGAGGATGATGCCGATTTGCATCTAGCTCAAAAGATAATGCAGAGTAAACAGTATAACATGTCAAGCCGAGCAGATGATGAATATGATTTTGATGATGCTCCAAGTCGAAAGACCAGGAAAAAGGAAGGGGGTAATGACCGTAAGTTAACTGAGAAGAATAACTTTGCAAATCGTATCTTGACTCAGCAAGAGCGCTGCCAATTCTGTTTCGAGAATCCCACTAGGCCAAGACATCTGGTTGTTGCAATTGCTAATTTCTCATACTTGATGTTACCCCAGTGGCAACCTGTCGTACCAGGTCACTGTTGTATTTTGCCAATGCAGCATGAATCTTCTACAAGAACACTAGACAATAATGTATGGGATGAAATTCGCAACTTCAAGAAGTGCTTAATAATGATGTTTGCGAAACAAGAGAAGGATCTAGTGTTTCTTGAAACAGTGATGGGTTTGGCACAACAACGCCGTCATTGTTTGGTTGAGTGCATCCCATTGCCCCGAGAAACTGCAAAACAAGCTCCTCTTTATTTTAAAAAGGCAATTGATGAAGCTGAAGACGAGTGGAGCCAGCATAACGCAAAGAAGCTTATTGATACAAGTGAGAAGGGATTGCGAGGTTCAATTCCCAAAGACTTCCCATACTTTCATGTAGAGTTTGGCCTAAACAAGGGATTTGTTCATGTTATTGATGACGAAAAACAGTTCAAAAGCAGCCTTGGCCTCGATGTTATAAGAGGTATGCTACGTTTGCCAGAGGAAGACATGCACCGCCGTCGGAGGCATGAGTCGGCGGAGGCACAAAAACAAGCTGTCGTAAATTTTGCCCGAGATTGGGAACCTTTTGACTGGACCAAACAGCTCGAGTGA 2433 43.61 MLSGVKFIPRGRIDRAQDEKSSDSTKERKKSGNRKEKNRKKKKISRYSSSDDEEIEKIRKGSKKNKKWYSSEEYTSSSSERESESSSERDGKKSRRRRNEKKAYGDRSRDEASDRSKKRPQTMRELDSSEDYSSSDLEDEGGDGFSGRKDRNRRSGKEERTMSKKRGTKKDVAGEESLDDAGGSHSLTDKEIVRKEMGLEWMLRPSDNSERKPATTSDQVPEEPQADETMKVNPRELNPYLKDDGNGYPEEMDGTKVGGNRLLSSSVVGDGGASWRMKALKRAQEQAAREGRKFDEVVEERWGSLGQLTVSLASHAAAPSRAHLHAIKSRKKGLTQEQQTPIQDYQRDSEKNSGREYLKDVSVRNPEMKAPKVHNSLSWGKRKGQNVSTKDVGLISDAVASLNKFANDGSFMHEVVHRQNIDTGGPLGSSYANCEGDVMSKSVSLETNQPGEASKQALSANQLAAKALRLRMEGKHKEAEELLKQTEIIKAKQGTEENTGERSGGGTSRYVMHDSSVRRKRKEDDADLHLAQKIMQSKQYNMSSRADDEYDFDDAPSRKTRKKEGGNDRKLTEKNNFANRILTQQERCQFCFENPTRPRHLVVAIANFSYLMLPQWQPVVPGHCCILPMQHESSTRTLDNNVWDEIRNFKKCLIMMFAKQEKDLVFLETVMGLAQQRRHCLVECIPLPRETAKQAPLYFKKAIDEAEDEWSQHNAKKLIDTSEKGLRGSIPKDFPYFHVEFGLNKGFVHVIDDEKQFKSSLGLDVIRGMLRLPEEDMHRRRRHESAEAQKQAVVNFARDWEPFDWTKQLE* 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6821635 6835674 - Vvi5g627 Vvi5g627 786769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g627 810 MobiDBLite consensus disorder prediction 321 354 - -
Vvi5g627 810 SUPERFAMILY HIT-like 576 710 IPR036265 -
Vvi5g627 810 MobiDBLite consensus disorder prediction 11 31 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 513 531 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 141 207 - -
Vvi5g627 810 Pfam Protein similar to CwfJ C-terminus 1 579 700 IPR006768 -
Vvi5g627 810 MobiDBLite consensus disorder prediction 77 94 - -
Vvi5g627 810 Coils Coil 465 485 - -
Vvi5g627 810 PANTHER CWF19-LIKE PROTEIN 2 31 810 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 544 572 - -
Vvi5g627 810 Coils Coil 280 300 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 101 131 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 1 265 - -
Vvi5g627 810 Pfam Protein similar to CwfJ C-terminus 2 709 806 IPR006767 -
Vvi5g627 810 MobiDBLite consensus disorder prediction 45 70 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 333 347 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 490 572 - -
Vvi5g627 810 MobiDBLite consensus disorder prediction 209 223 - -
Vvi5g627 810 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 31 810 IPR040194 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g627 K24940 CWF19L2; CWF19-like protein 2 - vvi:100264750 1526.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g627 Blo01g00097 . . Bda08g00268 . . . Bma05g01076 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0144 . . . . . . . . . . Bpe05g00866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006081 1 2 1 1 1 1 1 1 1 2 1 1 2 2 2 1 0 1 0 0 1 2 2 1 2 1 2 1 4 1 39