Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g63 ATGAGTTCAGGAAACAGAGGAACGCAGTCGCACCACCAAGCTCAGTCGTCGGGGACAAGCAATTTGAGAGTTTACCACACTGATTCAATGAGCAAAGCCATTGCGCAGTATACAATGGATGCTCGCCTCCACGCCCAACAAATCACTGCGTATTTATCGAAAATTCAACGGGGTGGCCATATACAGCCCTTTGGGTGTATGCTTGCGGTCGATGAGGCCACTTTTCGGGTCATTGCTTTCAGCGAAAATGCCCGAGAAATGCTCGGTCTCACTCCGCAATCGGTTCCGAGCCTTGAGAAGCCCGAGATCCTCCTAGTAGGTACTGATGTTCGCACGCTTTTCACTCCCTCGAGCGCAGTTCTCCTCGAAAAGGCGTTTGGGGCTCGGGAAATTACGTTGTTAAATCCCGTGTGGATTCATTCCAAGAATTCTGGAAAACCCTTTTACGCAATTTTGCATAGAATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGACTGAGGACCCTGCTCTGTCTATTGCTGGGGCGGATGAACATGGTGAGGTCGTGGCTGAGAGCAAGAGGTCTGATTTGGAGCCTTATATTGGGTTACACTATCCTGCCACGGACATTCCACAGGCTTCAAGGTTTTTGTTTAGGCAGAATCGGGTTAGGATGATCGTTGATTGCCATGCCACGCCTGTTCTGGTGATTCAAGATGAAGGGCTTATGCAGCCTCTATGCTTAGTTGGTTCAACCCTTCGGGCTCCTCATGGCTGCCATGCACAGTATATGGCCAACATGGGTTCAACTGCCTCATTAGCGATGGCTTTCCTAATGCAGGCATTTGGACTCCAATTGAACATGGAACTGCAGTTAGCATCGCAATTGTCTGAGAAACATGTTTTAAGGACCCAGACTCTCTTGTGTGACATGCTCCTTCGTGATTCCCCTACTGGAATTGTTACCCAAAGTCCTAGTATTATGGATCTTGTGAAGTGTGATGGAGCAGCACTTTATTGCCAGGGGAAGTATTATCCAACTGGGGTGACCCCGACTGAAGCCCAGATAAAGGATATTGCAGAGTGGTTGTTGGCAAACCATGCGGATTCAACAGGTTTAAGCACTGACAGTTTGGCTGATGCTGGCTACCCTGGGGCAGCCTCACTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACTTCAAGAGATTTTCTATTCTGGTTTCGGTCCCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCAGAGGACAAGGACGATGGGCAGAGGATGCATCCTCGTTCTTCATTCAAGGCATTTTTAGAAGTGGTCAAGAGTCGGAGTTTGCCATGGGAGAATGCGGAAATGGATGCAATTCATTCTCTGCAGCTTATTCTGCGTGACTCTTTTAAGGATGCTACTGATGGAAGCAATTCTAAGGCTGTAATGCATGCTCAGCTCGGGGAGCTAGAGTTGCAAGGGATGGATGAGTTGAGCTCTGTTGCAAGAGAAATGTTGACGGGGCTTTCTGTTGAGGAAGCTATGGGGAAGTCCTTGGTTCATGATCTTGTTTACAAGGAATCTGAAGAAACTGTTGACAAGCTTCTTCATCATGCTCTACAAGGTGAAGAAGATAAGAATGTAGAGATAAAATTGAGGACATTTGACTCACAACAGCATAAGAAGGCTGTTTTTGTGGTCGTTAATGCTTGCTCCAGTAGGGATTACACAAATAATATAGTTGGAGTTTGCTTTGTTGGTCAGGATGTTACTGGTCAGAAAGTGGTAATGGACAAATTTATCCATATACAAGGTGATTACAAAGCTATTGTACATAGTCCCAACCCTTTGATTCCTCCTATATTTGCTTCAGATGAGAACACAGTTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTCACTGGGTGGAGCAGGGGGGACATCATTGGGAAGATGTTGGTTGGGGAGATTTTTGGCAGTAGCTGTCGGCTGAAGGGTCCGGATGCTCTGACAAAATTCATGATTGTGTTGCACAATGCAATTGGAGGGCAAGACACAGACAAGTTTCCATTTTCCTTCTTTGACCAGAATGGAAAATATGTGCAAGCTCTTTTGACGGCAAATAAGAGAGTTAATATTGAGGGCCAGATTATTGGTGCCTTCTGCTTTTTGCAGATTGCAAGTCCTGAATTGCAGCAAGCTCTCAAAGTCCAAAGGCAACAGGAGAAAAAATGCTTTGCAAGGATGAAAGAGTTGGCTTACATTTGTCAGGAAATAAAGAACCCTTTAAGTGGCATACGTTTCACTAACTCTCTTTTGGAGGCCACTGACTTAACTGAAGATCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAGATGTCAAAGATCATAAGGGATGTTGATCTGGACAGCATTGAGGATGGTTCACTGGAGCTTGAGAGGGCTGAATTTTTACTTGGAAGTGTCATAAATGCTGTTGTTAGCCAAGTAATGATATTGTTGAGGGAAAGAGATTTACAATTGATCCGGGACATTCCTGAGGAAGTCAAAACACTGGCTGTTTATGGTGATCAAGTAAGAATTCAACAGGTTTTGGCTGATTTCTTACTGAATATGGTGCGTTATGCACCATCCCCAGACGGTTGGATAGAGATTCAAGTTCATCCAAGATTGAAGCAAATTTCTGAAGAAGTAAAACTTATGCATATTGAATTCAGGATGGTATGCCCTGGTGAAGGTCTTCCTCCTAATCTGATTCAAGACATGTTCCATAGCAGTCGTTGGATGACTCAGGAAGGTCTAGGGCTGAGCATGTGCAGGAAGATCTTAAAGCTCATTAATGGCGAAGTCCAATATATCAGAGAATCAGAAAGATGTTATTTTCTAATCAGCATAGAACTTCCTGTACCTCGCAGAGGCTCAAAGAGCGTTGACTAG 2949 44.93 MSSGNRGTQSHHQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTPQSVPSLEKPEILLVGTDVRTLFTPSSAVLLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGADEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMAFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGKYYPTGVTPTEAQIKDIAEWLLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGSNSKAVMHAQLGELELQGMDELSSVAREMLTGLSVEEAMGKSLVHDLVYKESEETVDKLLHHALQGEEDKNVEIKLRTFDSQQHKKAVFVVVNACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTVCSEWNTAMEKLTGWSRGDIIGKMLVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDKFPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFARMKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSIEDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVLADFLLNMVRYAPSPDGWIEIQVHPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHSSRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIELPVPRRGSKSVD* 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 710743 719210 - Vvi5g63 Vvi5g63 786205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g63 982 PRINTS Phytochrome signature 114 136 IPR001294 GO:0006355|GO:0009584
Vvi5g63 982 PRINTS Phytochrome signature 629 644 IPR001294 GO:0006355|GO:0009584
Vvi5g63 982 CDD HATPase_Phy-like 859 971 IPR044767 -
Vvi5g63 982 Pfam PAS fold 50 166 IPR013654 GO:0006355
Vvi5g63 982 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 739 804 IPR036097 GO:0000155|GO:0007165
Vvi5g63 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 505 593 IPR035965 -
Vvi5g63 982 Gene3D PAS domain 49 166 - -
Vvi5g63 982 ProSiteProfiles PAS repeat profile. 607 659 IPR000014 -
Vvi5g63 982 CDD HisKA 748 808 IPR003661 GO:0000155|GO:0007165
Vvi5g63 982 Pfam PAS fold 506 591 IPR013767 GO:0006355
Vvi5g63 982 Pfam PAS fold 607 726 IPR013767 GO:0006355
Vvi5g63 982 ProSiteProfiles PAS repeat profile. 507 544 IPR000014 -
Vvi5g63 982 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 178 310 IPR016132 -
Vvi5g63 982 SUPERFAMILY GAF domain-like 178 274 - -
Vvi5g63 982 Pfam His Kinase A (phospho-acceptor) domain 752 812 IPR003661 GO:0000155|GO:0007165
Vvi5g63 982 MobiDBLite consensus disorder prediction 1 22 - -
Vvi5g63 982 Gene3D - 811 976 IPR036890 -
Vvi5g63 982 Gene3D - 729 810 - -
Vvi5g63 982 SUPERFAMILY GAF domain-like 294 472 - -
Vvi5g63 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 169 IPR035965 -
Vvi5g63 982 Gene3D - 175 292 IPR029016 -
Vvi5g63 982 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 860 966 IPR003594 -
Vvi5g63 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 724 IPR035965 -
Vvi5g63 982 SMART HisKA_10 748 812 IPR003661 GO:0000155|GO:0007165
Vvi5g63 982 Pfam Phytochrome region 299 473 IPR013515 GO:0006355|GO:0009584
Vvi5g63 982 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 823 972 IPR036890 -
Vvi5g63 982 ProSiteProfiles Histidine kinase domain profile. 755 975 IPR005467 -
Vvi5g63 982 Gene3D PAS domain 620 728 - -
Vvi5g63 982 CDD PAS 618 726 IPR000014 -
Vvi5g63 982 SMART HKATPase_4 860 975 IPR003594 -
Vvi5g63 982 Gene3D PAS domain 498 602 - -
Vvi5g63 982 Pfam GAF domain 195 273 IPR003018 GO:0005515
Vvi5g63 982 PANTHER PHYTOCHROME 507 976 - -
Vvi5g63 982 PANTHER PHYTOCHROME 5 45 - -
Vvi5g63 982 PANTHER PHYTOCHROME 46 178 - -
Vvi5g63 982 PANTHER PHYTOCHROME 270 505 - -
Vvi5g63 982 PANTHER PHYTOCHROME 179 273 - -
Vvi5g63 982 Gene3D - 293 473 IPR043150 -
Vvi5g63 982 PANTHER TWO-COMPONENT HISTIDINE KINASE 179 273 - -
Vvi5g63 982 PANTHER TWO-COMPONENT HISTIDINE KINASE 270 505 - -
Vvi5g63 982 PANTHER TWO-COMPONENT HISTIDINE KINASE 507 976 - -
Vvi5g63 982 PANTHER TWO-COMPONENT HISTIDINE KINASE 46 178 - -
Vvi5g63 982 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 45 - -
Vvi5g63 982 ProSitePatterns Phytochrome chromophore attachment site signature. 250 259 IPR013516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g63 K12121 PHYB; phytochrome B - vvi:100261882 1878.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42