Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g63 | ATGAGTTCAGGAAACAGAGGAACGCAGTCGCACCACCAAGCTCAGTCGTCGGGGACAAGCAATTTGAGAGTTTACCACACTGATTCAATGAGCAAAGCCATTGCGCAGTATACAATGGATGCTCGCCTCCACGCCCAACAAATCACTGCGTATTTATCGAAAATTCAACGGGGTGGCCATATACAGCCCTTTGGGTGTATGCTTGCGGTCGATGAGGCCACTTTTCGGGTCATTGCTTTCAGCGAAAATGCCCGAGAAATGCTCGGTCTCACTCCGCAATCGGTTCCGAGCCTTGAGAAGCCCGAGATCCTCCTAGTAGGTACTGATGTTCGCACGCTTTTCACTCCCTCGAGCGCAGTTCTCCTCGAAAAGGCGTTTGGGGCTCGGGAAATTACGTTGTTAAATCCCGTGTGGATTCATTCCAAGAATTCTGGAAAACCCTTTTACGCAATTTTGCATAGAATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGACTGAGGACCCTGCTCTGTCTATTGCTGGGGCGGATGAACATGGTGAGGTCGTGGCTGAGAGCAAGAGGTCTGATTTGGAGCCTTATATTGGGTTACACTATCCTGCCACGGACATTCCACAGGCTTCAAGGTTTTTGTTTAGGCAGAATCGGGTTAGGATGATCGTTGATTGCCATGCCACGCCTGTTCTGGTGATTCAAGATGAAGGGCTTATGCAGCCTCTATGCTTAGTTGGTTCAACCCTTCGGGCTCCTCATGGCTGCCATGCACAGTATATGGCCAACATGGGTTCAACTGCCTCATTAGCGATGGCTTTCCTAATGCAGGCATTTGGACTCCAATTGAACATGGAACTGCAGTTAGCATCGCAATTGTCTGAGAAACATGTTTTAAGGACCCAGACTCTCTTGTGTGACATGCTCCTTCGTGATTCCCCTACTGGAATTGTTACCCAAAGTCCTAGTATTATGGATCTTGTGAAGTGTGATGGAGCAGCACTTTATTGCCAGGGGAAGTATTATCCAACTGGGGTGACCCCGACTGAAGCCCAGATAAAGGATATTGCAGAGTGGTTGTTGGCAAACCATGCGGATTCAACAGGTTTAAGCACTGACAGTTTGGCTGATGCTGGCTACCCTGGGGCAGCCTCACTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACTTCAAGAGATTTTCTATTCTGGTTTCGGTCCCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCAGAGGACAAGGACGATGGGCAGAGGATGCATCCTCGTTCTTCATTCAAGGCATTTTTAGAAGTGGTCAAGAGTCGGAGTTTGCCATGGGAGAATGCGGAAATGGATGCAATTCATTCTCTGCAGCTTATTCTGCGTGACTCTTTTAAGGATGCTACTGATGGAAGCAATTCTAAGGCTGTAATGCATGCTCAGCTCGGGGAGCTAGAGTTGCAAGGGATGGATGAGTTGAGCTCTGTTGCAAGAGAAATGTTGACGGGGCTTTCTGTTGAGGAAGCTATGGGGAAGTCCTTGGTTCATGATCTTGTTTACAAGGAATCTGAAGAAACTGTTGACAAGCTTCTTCATCATGCTCTACAAGGTGAAGAAGATAAGAATGTAGAGATAAAATTGAGGACATTTGACTCACAACAGCATAAGAAGGCTGTTTTTGTGGTCGTTAATGCTTGCTCCAGTAGGGATTACACAAATAATATAGTTGGAGTTTGCTTTGTTGGTCAGGATGTTACTGGTCAGAAAGTGGTAATGGACAAATTTATCCATATACAAGGTGATTACAAAGCTATTGTACATAGTCCCAACCCTTTGATTCCTCCTATATTTGCTTCAGATGAGAACACAGTTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTCACTGGGTGGAGCAGGGGGGACATCATTGGGAAGATGTTGGTTGGGGAGATTTTTGGCAGTAGCTGTCGGCTGAAGGGTCCGGATGCTCTGACAAAATTCATGATTGTGTTGCACAATGCAATTGGAGGGCAAGACACAGACAAGTTTCCATTTTCCTTCTTTGACCAGAATGGAAAATATGTGCAAGCTCTTTTGACGGCAAATAAGAGAGTTAATATTGAGGGCCAGATTATTGGTGCCTTCTGCTTTTTGCAGATTGCAAGTCCTGAATTGCAGCAAGCTCTCAAAGTCCAAAGGCAACAGGAGAAAAAATGCTTTGCAAGGATGAAAGAGTTGGCTTACATTTGTCAGGAAATAAAGAACCCTTTAAGTGGCATACGTTTCACTAACTCTCTTTTGGAGGCCACTGACTTAACTGAAGATCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAGATGTCAAAGATCATAAGGGATGTTGATCTGGACAGCATTGAGGATGGTTCACTGGAGCTTGAGAGGGCTGAATTTTTACTTGGAAGTGTCATAAATGCTGTTGTTAGCCAAGTAATGATATTGTTGAGGGAAAGAGATTTACAATTGATCCGGGACATTCCTGAGGAAGTCAAAACACTGGCTGTTTATGGTGATCAAGTAAGAATTCAACAGGTTTTGGCTGATTTCTTACTGAATATGGTGCGTTATGCACCATCCCCAGACGGTTGGATAGAGATTCAAGTTCATCCAAGATTGAAGCAAATTTCTGAAGAAGTAAAACTTATGCATATTGAATTCAGGATGGTATGCCCTGGTGAAGGTCTTCCTCCTAATCTGATTCAAGACATGTTCCATAGCAGTCGTTGGATGACTCAGGAAGGTCTAGGGCTGAGCATGTGCAGGAAGATCTTAAAGCTCATTAATGGCGAAGTCCAATATATCAGAGAATCAGAAAGATGTTATTTTCTAATCAGCATAGAACTTCCTGTACCTCGCAGAGGCTCAAAGAGCGTTGACTAG | 2949 | 44.93 | MSSGNRGTQSHHQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTPQSVPSLEKPEILLVGTDVRTLFTPSSAVLLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGADEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMAFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGKYYPTGVTPTEAQIKDIAEWLLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGSNSKAVMHAQLGELELQGMDELSSVAREMLTGLSVEEAMGKSLVHDLVYKESEETVDKLLHHALQGEEDKNVEIKLRTFDSQQHKKAVFVVVNACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTVCSEWNTAMEKLTGWSRGDIIGKMLVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDKFPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFARMKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSIEDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVLADFLLNMVRYAPSPDGWIEIQVHPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHSSRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIELPVPRRGSKSVD* | 983 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 710743 | 719210 | - | Vvi5g63 | Vvi5g63 | 786205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g63 | 982 | PRINTS | Phytochrome signature | 114 | 136 | IPR001294 | GO:0006355|GO:0009584 | |
| Vvi5g63 | 982 | PRINTS | Phytochrome signature | 629 | 644 | IPR001294 | GO:0006355|GO:0009584 | |
| Vvi5g63 | 982 | CDD | HATPase_Phy-like | 859 | 971 | IPR044767 | - | |
| Vvi5g63 | 982 | Pfam | PAS fold | 50 | 166 | IPR013654 | GO:0006355 | |
| Vvi5g63 | 982 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 739 | 804 | IPR036097 | GO:0000155|GO:0007165 | |
| Vvi5g63 | 982 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 505 | 593 | IPR035965 | - | |
| Vvi5g63 | 982 | Gene3D | PAS domain | 49 | 166 | - | - | |
| Vvi5g63 | 982 | ProSiteProfiles | PAS repeat profile. | 607 | 659 | IPR000014 | - | |
| Vvi5g63 | 982 | CDD | HisKA | 748 | 808 | IPR003661 | GO:0000155|GO:0007165 | |
| Vvi5g63 | 982 | Pfam | PAS fold | 506 | 591 | IPR013767 | GO:0006355 | |
| Vvi5g63 | 982 | Pfam | PAS fold | 607 | 726 | IPR013767 | GO:0006355 | |
| Vvi5g63 | 982 | ProSiteProfiles | PAS repeat profile. | 507 | 544 | IPR000014 | - | |
| Vvi5g63 | 982 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 178 | 310 | IPR016132 | - | |
| Vvi5g63 | 982 | SUPERFAMILY | GAF domain-like | 178 | 274 | - | - | |
| Vvi5g63 | 982 | Pfam | His Kinase A (phospho-acceptor) domain | 752 | 812 | IPR003661 | GO:0000155|GO:0007165 | |
| Vvi5g63 | 982 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vvi5g63 | 982 | Gene3D | - | 811 | 976 | IPR036890 | - | |
| Vvi5g63 | 982 | Gene3D | - | 729 | 810 | - | - | |
| Vvi5g63 | 982 | SUPERFAMILY | GAF domain-like | 294 | 472 | - | - | |
| Vvi5g63 | 982 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 55 | 169 | IPR035965 | - | |
| Vvi5g63 | 982 | Gene3D | - | 175 | 292 | IPR029016 | - | |
| Vvi5g63 | 982 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 860 | 966 | IPR003594 | - | |
| Vvi5g63 | 982 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 621 | 724 | IPR035965 | - | |
| Vvi5g63 | 982 | SMART | HisKA_10 | 748 | 812 | IPR003661 | GO:0000155|GO:0007165 | |
| Vvi5g63 | 982 | Pfam | Phytochrome region | 299 | 473 | IPR013515 | GO:0006355|GO:0009584 | |
| Vvi5g63 | 982 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 823 | 972 | IPR036890 | - | |
| Vvi5g63 | 982 | ProSiteProfiles | Histidine kinase domain profile. | 755 | 975 | IPR005467 | - | |
| Vvi5g63 | 982 | Gene3D | PAS domain | 620 | 728 | - | - | |
| Vvi5g63 | 982 | CDD | PAS | 618 | 726 | IPR000014 | - | |
| Vvi5g63 | 982 | SMART | HKATPase_4 | 860 | 975 | IPR003594 | - | |
| Vvi5g63 | 982 | Gene3D | PAS domain | 498 | 602 | - | - | |
| Vvi5g63 | 982 | Pfam | GAF domain | 195 | 273 | IPR003018 | GO:0005515 | |
| Vvi5g63 | 982 | PANTHER | PHYTOCHROME | 507 | 976 | - | - | |
| Vvi5g63 | 982 | PANTHER | PHYTOCHROME | 5 | 45 | - | - | |
| Vvi5g63 | 982 | PANTHER | PHYTOCHROME | 46 | 178 | - | - | |
| Vvi5g63 | 982 | PANTHER | PHYTOCHROME | 270 | 505 | - | - | |
| Vvi5g63 | 982 | PANTHER | PHYTOCHROME | 179 | 273 | - | - | |
| Vvi5g63 | 982 | Gene3D | - | 293 | 473 | IPR043150 | - | |
| Vvi5g63 | 982 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 179 | 273 | - | - | |
| Vvi5g63 | 982 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 270 | 505 | - | - | |
| Vvi5g63 | 982 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 507 | 976 | - | - | |
| Vvi5g63 | 982 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 46 | 178 | - | - | |
| Vvi5g63 | 982 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 5 | 45 | - | - | |
| Vvi5g63 | 982 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 250 | 259 | IPR013516 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g63 | K12121 | - | vvi:100261882 | 1878.99 |