Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g630 ATGGCTGGGATTGCAAGTGAGGAGAGCGGAATTGGTAGGTCTACAGATATAATTTCAAGTGGGCAACGATGCCAGTCGGGAGAAGCATTGGCAGAATGGCGGTCCTCTGAGCAAGTGGAAAATGGAACCCCATCAACTTCCCCACCTTACTGGGACTCGGATGACCCCGATGATACTGGGGCCAAGCCATCTGAGTTATATGGAAAATACACTTGGAAGATTGAGAAATTTTCACAGATTAACAAGAGAGAACTCCGTAGTAATGCGTTTGAGGTTGGCGGTTACAAATGGTACATTTTAATATATCCCCAAGGTTGTGATGTCTGCAACCACCTCTCCTTGTTTCTTTGTGTTGCTAATCATGACAAACTTCTTCCAGGATGGAGTCATTTTGCACAGTTTACAATAGCCGTGGTTAATAAAGATCCAAAGAAATCTAAATATTCTGATACGTTGCATCGATTTTGGAAGAAAGAGCATGATTGGGGGTGGAAAAAATTCATGGAACTATCAAAAGTGTTAGATGGGTTTATTGATGCTGACACTCTTATTATAAAGGCTCAAGTCCAAGTTATCAGGGAGAGAGCAGACCGCCCTTTCCGTTGTCTTGATTGCCAGTACAGGAGAGAACTTGTTCGTGTCTATCTTACAAATGTGGAGCAAATTTGCCGGCGTTTTGTGGAAGAAAGAAGAGGCAAGCTTGGGAAGTTGATAGAGGACAAAGCTAGATGGTCAAGCTTCTGTGCTTTCTGGTTGGGAATTGACCAAAATGCTAGGCGCCGCATGTCCAGGGAGAAAACGGACTCCATTCTGAAAGTAGTTGTAAAACACTTTTTTATAGAGAAGGAAGTCACATCCACTTTGGTAATGGATTCTTTGTACAGTGGTCTGAAGGCTCTTGAAGGCCAGACTAATAAGAGCAAGAAGGGGAGGGCGAAACTATTGGATGCTGAAGAAATGCCAGCTCCTATTGTTCGTGTGGAGAAAGATATGTTTGTTTTGGTGGATGATGTTTTATTACTGCTTGAAAGGGCTGCTTTGGAACCATTGCCTCCAAAAGATGAGAAAGGTCCCCAGAATCGTACAAAGGATGGGGGTCCTGGAGAGGACTTCAACAAGGACTCCATCGAGCGTGATGAAAGGCGTCTTACAGAATTGGGTCGTAGAACAGTTGAAATTTTTGTCCTTGCCCATATTTTCAGCAATAAAATTGAGGTTTCCTACCAGGAAGCTGTCGCTTTGAAGAGGCAAGAAGAACTCATCCGTGAAGAAGAGGCAGCTTGGTTGGCTGAAAGTGAGCAGAAGGCAAAACGAGGAGCAATTGAAAAGGAAAAAAAATCCAAGAAAAAGCAGGCTAAACAAAAAAGGAACAATCGCAAAGGGAAAGATAAAGGAAAGGATGAAAGGCCTGGTGTGACACTACAAGAAAAGCAGCAACAAGGGAGCCCTAATGATGGCAGAAACGACTTCATGAGGGAACAAGTGCAAACTGTGCTTGAAAAGCCTGATACCCTGGAAGATGTTTCTGATGTGTCTGATTCAGTAGATTGTGCTGCTGAAATGCCTCAGCCTGATTCAGAAGACAGAGATGCTAGTCATATCAATTGGGATACTGACACATCTGAAGTTCATCCTCCCACAGAAGCCAGTAGCAGTGCGATTAGTGGTCTGTCATCTGTACAGAATGGAATTACAGATAGGAAGAGCCCAGGTGTAATGGATGATAGTTCCTCTACTTGTTCTACAGACTCAGTCCCATCTGTGGTAATGAATGGGCCCTATAAAGGGAACTCATTTCCAAACTACAAAAATCAAAAGTCACCAAGCAGAGGAAAAAATCAACGAAGTAAGGTGGCATATGATGGGACTAGTTGGGCAAATGAGTTGGATGCTCATCCCTCTGGACCAGCCACAGATGCTGGGGATCTAAATGATGCTTCTGGTAGTTGTAAGGCAGCTGAATCTGAGTCCGAAGCTGGCAGTCTCTCCTTACATGATCAGATTAAGTGGCTTGAGCAGCATGTGGTTAAGAAGGAAGAAGAAGTTGTTTTGCTGCAGAAGAAACTGAGCATCAAAGACCAGGTTGATACAGAGAGGCAATCCAAAGAAAAGACAACAGCAGCACCATCCCCTCCCCGGAGCCCTCCCAGAAGTCTCCCCTCTACTGCTCAGCTAAAGTTGGAGTCAAAGAGCACTCCTATTGCTGAACCTGTTTCAGTTAGGAAAACATCTTCAAACAGCCCACAAGCAGCTTATAAAGCAGCACCTTTAGTAACTTCAACCCAAACAATGATGGTGTCCAAACCAGAGACTCAAAAAACTGCAACTCCAAAACCAACTGAACAACCCACAGTTCACCAAGTGCCCATGGTGTCAAGGCCTTCTACTGCTCCTCTAATCCCTGGTCCCAGACCAACTGCTCCTGTGGTTTCTATGGTTCAAACAACCCCACTGCTAGCCCGTTCTGTGAGTGCTGCTGGACGGTTAGGTCCTGACCCCTCACCAGCGACGCATAGTTATGTACCTCAGTCCTATAGAAATGCCATAATTGGTAACTCTGTTTCTTCGAGTTCATCTGGCTTCAGTCATCCTCACTCAAGTTCAACAGGGAACTCTTCACCAGCATACTCGCAACTGCCTACGTTGGACATCTTGCAGAATGGTGCACAATGGACAGAGCGCTCTCAAAGGGATGCCAGCAGAAGCACAAACTGTGGTCCTTCCATGCTTAATGACATTCAAAACATTGATTTCTACAATCCTGTACACAGTGGATCAAGGGAGCACTTTTCAACTGAGTTTCCAGCCGGTACATCCGGGTATCAGACCCATGGTGTGATGATAGATGAGTTCCCCTTCCCTCACCTAGACATCATCAATGATCTGCTCAATGATGAGCAGGTAGGGAAGGCTGCTAGGGCAAGCACAAGCTCCCAGAGTCTCAGCAATGGGCCACACCTTCTGAGTCGGCAGCGTTCTTTTCCAGGTGATATGGGCATAGCAGGTGATTTGGGATCTTCAACTACTAATCCACCACATTATGCAAACGGGCCAATAGATGGATTAATTCCAAACCAGTGGCAGGTGGCTGGTTCTGATATTCCTATGTTTAACGCAAGGAATGCAGTGGAGAGCGATGGCTACCCATATTACATTCCAGATTACCAAAATCCTGCATGTGGCATTGATGGATATACAATGTTCCGGCCTTCAAATGGACATTGA 3225 45.21 MAGIASEESGIGRSTDIISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDSDDPDDTGAKPSELYGKYTWKIEKFSQINKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFIDADTLIIKAQVQVIRERADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGKLIEDKARWSSFCAFWLGIDQNARRRMSREKTDSILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQTNKSKKGRAKLLDAEEMPAPIVRVEKDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKDGGPGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVSYQEAVALKRQEELIREEEAAWLAESEQKAKRGAIEKEKKSKKKQAKQKRNNRKGKDKGKDERPGVTLQEKQQQGSPNDGRNDFMREQVQTVLEKPDTLEDVSDVSDSVDCAAEMPQPDSEDRDASHINWDTDTSEVHPPTEASSSAISGLSSVQNGITDRKSPGVMDDSSSTCSTDSVPSVVMNGPYKGNSFPNYKNQKSPSRGKNQRSKVAYDGTSWANELDAHPSGPATDAGDLNDASGSCKAAESESEAGSLSLHDQIKWLEQHVVKKEEEVVLLQKKLSIKDQVDTERQSKEKTTAAPSPPRSPPRSLPSTAQLKLESKSTPIAEPVSVRKTSSNSPQAAYKAAPLVTSTQTMMVSKPETQKTATPKPTEQPTVHQVPMVSRPSTAPLIPGPRPTAPVVSMVQTTPLLARSVSAAGRLGPDPSPATHSYVPQSYRNAIIGNSVSSSSSGFSHPHSSSTGNSSPAYSQLPTLDILQNGAQWTERSQRDASRSTNCGPSMLNDIQNIDFYNPVHSGSREHFSTEFPAGTSGYQTHGVMIDEFPFPHLDIINDLLNDEQVGKAARASTSSQSLSNGPHLLSRQRSFPGDMGIAGDLGSSTTNPPHYANGPIDGLIPNQWQVAGSDIPMFNARNAVESDGYPYYIPDYQNPACGIDGYTMFRPSNGH* 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6896711 6914835 + Vvi5g630 Vvi5g630 786772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g630 1074 MobiDBLite consensus disorder prediction 693 752 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 736 752 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 855 878 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 970 989 - -
Vvi5g630 1074 SUPERFAMILY TRAF domain-like 68 194 - -
Vvi5g630 1074 Coils Coil 438 458 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 494 508 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 597 621 - -
Vvi5g630 1074 Pfam MATH domain 74 191 IPR002083 GO:0005515
Vvi5g630 1074 CDD MATH 68 190 IPR002083 GO:0005515
Vvi5g630 1074 PANTHER MEPRIN AND TRAF (MATH)-LIKE DOMAIN PROTEIN 1 880 - -
Vvi5g630 1074 PANTHER MEPRIN AND TRAF (MATH)-LIKE DOMAIN PROTEIN 880 1009 - -
Vvi5g630 1074 PANTHER MEPRIN AND TRAF (MATH)-LIKE DOMAIN PROTEIN 1014 1073 - -
Vvi5g630 1074 ProSiteProfiles MATH/TRAF domain profile. 67 189 IPR002083 GO:0005515
Vvi5g630 1074 MobiDBLite consensus disorder prediction 474 491 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 970 995 - -
Vvi5g630 1074 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 880 - -
Vvi5g630 1074 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1014 1073 - -
Vvi5g630 1074 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 880 1009 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 1 58 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 522 537 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 435 662 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 12 52 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 350 377 - -
Vvi5g630 1074 MobiDBLite consensus disorder prediction 767 789 - -
Vvi5g630 1074 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 196 IPR008974 GO:0005515
Vvi5g630 1074 SMART math_3 69 173 IPR002083 GO:0005515
Vvi5g630 1074 MobiDBLite consensus disorder prediction 538 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g630 - - - vvi:100247786 1959.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48