Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g640 ATGAGGACGGTCGTCACCTTGATTAATGCGCGCTTGGGTCTTCTTCATCTTCATCAGAACAACATACAGCCAAACAAATCCATGGATTCTCTCCCTCTCCATCTCTGCACACTCCATACATCAGCTACTATTATCAACAGATCCCACGCTTTTTTTCATTCTATGGCTCTCCTCGCCCTGCTCTACTACCGAGCTTCATCTTTTTATCTCTATGCCACCGCTCCATCCCATCTGCTAACTTGGCTTTTGGTCTTTGCTTCTGAGCTCTTTCTTTCTTTTCTTTGGCTCCTCAGCCAAGCTTATCAATGGAGACCGGTGACTCGAACTGTGTTTCCGGAGACGTTTCCGGAAGATAGAGAACTGGGTGCAATCGACGTCTTTATTTGCACTGCGGACCCAAAGAAGGAGCCTCCAGTGAAGGTGATGAACACGGTTTTATCGGCCATGGCCCTAGACTACCCGCCGGAGAAGGTAGTAGTCTATCTATCCGATGATGGGGGTTCTTCTCTTACTTTAAATGCGATTCGGGAGGCATGGAGGTTTGCGCGGCTGTGGATTCCCTTCTGCAAGGCTTACGGAATCAGGACAAGGTGTCCGGAGGCTTACTTTTCAAAAGAGGAGGAGGAGGATGATCAGTTTGTGGAAGAGAGAGAGAAGATCAAGAGGAATTACGAGCTGTTTAAGGAGCGTGTGGTGGGAGCGTGTGGAAAAGATGAGGTTGAACAAGGAGTGGGCATTGCTGGTCATAATCATCCTCCGCTAATTGAGGTGATAAGAGATGACAACACTGTTAATGAAGACAGTAGCGCTGGTCATCCCAATATACCTCTCCTCGTCTATGTTTCTCGCGAGAAAAGACCTTCTCATCCACATCATTTCAAAGCCGGGGCTCTCAACACTCTTCTCAGGGTCTCTGGCATCATAAGCAACGCGCCCCATGTATTAGTATTAGACTGCGACTTTTTCTGCAATGACCCCTCATCTGCCCGCCAAGCAATGTGTTTCCACCTTGATTCCAAAATCTCTTGCTCTCTAGCTTTTGTTCAATTCCCTCAGAAATTCCACAACTTCAGTATGAATGACATCTATGATGGCCGATTGAGATCAGTATTTGAGATGAAGTGCCCCGGTATGGATGGGCATCAGGGACCCATGTTATCGGGTACATGCTTTTACATAAAGAGAGCGGCATTGTATGGGAATGTTGGAGAAGTTAAGGATCCCCTCCAACTAAAACAATATTTTGGTCCATCCAATGGGCTCATCAAATCACTTGGCCAGAGCTACCCATGCAAGGTCATTGAAGACGGGAGCTTCTCGACCAGGTTGCAACAAGAGACACAGTTTTTAGCCTCTTGCAGTTATGAAGAACACACAAAATGGGGTGAAGAGATAGGTTTCTTGTACAATTCTGTGCTAGAGGATTACTTTACGGGATTCATTTTGCATTGTAAGGGGTGGAATTCCATATACTATAGCCCTCCCAGACCAGCATTCTTGGGCACTGCTACTTCGAACTTGAATGACACATTAGTGCAAGGTAGAAGATGGTACTGTGGACTGCTTCAAGTCACTTTCTCAAGGTTCTGCCCTCCCATTTATGGGCTGTTGAGGATGTCTTTTCTGGAGAGCATGTGCTACGCTCACCTAGCACTTAATCCTTTTTCTTCCTTCTGCTTATGGTGTTTGGCTACCATCCCTCAACTCTGCCTCTTGAATGGCATCCCAATTTACCCAAAGGCTTCAGATTCATGGTTTGTTATATTTTCATTTGTTTTCTTCTCCTCCCTCTTGAAACATCTAAAGGATGTTCACTCCACTGGAGGATCAGTTCAGACATGGTGGAATGAGGAGCGCATTTGGATGATGAAGTCAATTACAAGCCATTTCTACGGAAGCTTGGATGGTATACTGAAGTCTGTGGGCATGGGAGAAGCCAGTTTCACACCAACAAATAAAGCCATTCAAGATGACCAAGTTAAACTCTACCAAATGGGCATATTTGATTTCCGAACATCAACGGTGCTACTTGCTCCATTAGTAACCTTAGTCATTTTCAACATGATTTCTTTGGTGGGAGGAGTTGGCAGAGTGATGGTAGCTGGATGCTGTGACAAGCTTTTGGGACAGATTTTTCTTTCATTTTTCATCGTAGCTGTCAACTACCCAGTGATTGAAGGGATGATCCTGAGGAGGGACAAAGGGCGGATTCCACCCTCTGTTGCTCTATTGTCACTTGCATTGTCGATGTTGTTCTTGATTTCGGGGTCTATGGTTCTCATGTCTTGA 2289 45.65 MRTVVTLINARLGLLHLHQNNIQPNKSMDSLPLHLCTLHTSATIINRSHAFFHSMALLALLYYRASSFYLYATAPSHLLTWLLVFASELFLSFLWLLSQAYQWRPVTRTVFPETFPEDRELGAIDVFICTADPKKEPPVKVMNTVLSAMALDYPPEKVVVYLSDDGGSSLTLNAIREAWRFARLWIPFCKAYGIRTRCPEAYFSKEEEEDDQFVEEREKIKRNYELFKERVVGACGKDEVEQGVGIAGHNHPPLIEVIRDDNTVNEDSSAGHPNIPLLVYVSREKRPSHPHHFKAGALNTLLRVSGIISNAPHVLVLDCDFFCNDPSSARQAMCFHLDSKISCSLAFVQFPQKFHNFSMNDIYDGRLRSVFEMKCPGMDGHQGPMLSGTCFYIKRAALYGNVGEVKDPLQLKQYFGPSNGLIKSLGQSYPCKVIEDGSFSTRLQQETQFLASCSYEEHTKWGEEIGFLYNSVLEDYFTGFILHCKGWNSIYYSPPRPAFLGTATSNLNDTLVQGRRWYCGLLQVTFSRFCPPIYGLLRMSFLESMCYAHLALNPFSSFCLWCLATIPQLCLLNGIPIYPKASDSWFVIFSFVFFSSLLKHLKDVHSTGGSVQTWWNEERIWMMKSITSHFYGSLDGILKSVGMGEASFTPTNKAIQDDQVKLYQMGIFDFRTSTVLLAPLVTLVIFNMISLVGGVGRVMVAGCCDKLLGQIFLSFFIVAVNYPVIEGMILRRDKGRIPPSVALLSLALSMLFLISGSMVLMS* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7052204 7076037 + Vvi5g640 Vvi5g640 786782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g640 762 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 251 447 IPR029044 -
Vvi5g640 762 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 113 207 IPR029044 -
Vvi5g640 762 Pfam Cellulose synthase 124 401 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi5g640 762 Pfam Cellulose synthase 409 752 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi5g640 762 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING]-LIKE 31 760 - -
Vvi5g640 762 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 31 760 - -
Vvi5g640 762 SUPERFAMILY Nucleotide-diphospho-sugar transferases 124 587 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g640 - - - vvi:100246042 1448.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36