Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g641 ATGGCTCAACATGAGGGAGAAGCGTCGCCGAGGGTTCAGTACCCACTGAACTCCGAGGCGTATAGAATTCTTGATGAGATTGGTGTTGGCGTGAGCGCTATTGTTTACAAAGCTGAATGTCTTCCGATGAATTCAGCGTTGGTGGCGATCAAGTCTATCGATCTCGATCAATCTCGTGCTGATCTTGACAGTGTTCTACGTGAAGTGAAGACCATGTCGCTTCTCTCTCACCCCAACATTCTCAGAGCCCACTGTTCGTTTGCCGTCGATCATCGCCTTTGGGTGGTGATGCCTTTCATGTCTGCTGGGTCTCTGCAATCCATAATCGGTTCTTCTTTCCCTGATGGTTTACCAGAACCCTGCATTGCCATAGTTCTGAAAGAAACTTTGAACGCCTTATCGTATCTTCATGACCAAGGCCATCTTCATCGAGACATCAAGGCTGGTAATATTCTGGTGGATTCAACCGGCACAGTTAAGCTCGCTGATTTCGGGGTCTCGGCTTTGATTTACGAGTCGAACACCATTACGGGAACGCCGTACTGGATGGCCCCGGAGGTGATACACTCGCATACTGGGTACAGTTTGAAGGCTGATATATGGTCGTTTGGAATCACCGCATTAGAATTGGCTCATGGACGGCCACCTCTTTCTCACCTCCCACCTTCCAAGTCTCTGGTCATGAAGATCACAAAGCGCTTTCGATTCTCAGACTACGAACAGAGCAGGAGTGAACAAAGCCCGAAGTTCTCCAAGTCTTTCAAAGATATGGTAGCTTCTTGTCTCGATCAAGACCCGTCGAAAAGGCCCTCTGCAGACAAACTGCTGAAGCATCCATTCTTCAAGAACTGCAAGAATTCAGAGTTTCTGGTAAATAAAGTGCTGAGGATCAGTGGGTGGAACTTTAAGGAGGACGTGTTAGAACTAGACCCGGTTTTCCCAAGCGAAACAGAAACACTTTCCCCTCCAAGACGGCAGGTCCGGTTTGCTGCTGAACCAATCATTCGGGATCCGAGCAATGAGAGTAGCTCAGACAATCCGGGTTCATCATCTCAAAGTGTGGAAGGGGTCCAAGAGCTGCACGATGAACACACAAATGAGCACGCTGGAATGAGAATGTTGAGGGGTCTGACTCGGAGTTTGTATGATCAGAGGAGGGCTGTGGGTTTAATGCTTACCATATTAACTGGGCAGGAGGAAGTAAGCAGAGAGGACCAGTTACTGCAGGAGAATGAGAGGCTGAAGATGGAACTGGAGCAAGAGAAGAAGAAGACCTCTGAAATGGAGATGGAGATGGAGTTTCTCAGTCTTCAGATCTCCCGTGGCTCCACCAGCGCTGCATCCAGGCAGAGTGGTGAGTGA 1362 48.97 MAQHEGEASPRVQYPLNSEAYRILDEIGVGVSAIVYKAECLPMNSALVAIKSIDLDQSRADLDSVLREVKTMSLLSHPNILRAHCSFAVDHRLWVVMPFMSAGSLQSIIGSSFPDGLPEPCIAIVLKETLNALSYLHDQGHLHRDIKAGNILVDSTGTVKLADFGVSALIYESNTITGTPYWMAPEVIHSHTGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLVMKITKRFRFSDYEQSRSEQSPKFSKSFKDMVASCLDQDPSKRPSADKLLKHPFFKNCKNSEFLVNKVLRISGWNFKEDVLELDPVFPSETETLSPPRRQVRFAAEPIIRDPSNESSSDNPGSSSQSVEGVQELHDEHTNEHAGMRMLRGLTRSLYDQRRAVGLMLTILTGQEEVSREDQLLQENERLKMELEQEKKKTSEMEMEMEFLSLQISRGSTSAASRQSGE* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7076728 7078360 + Vvi5g641 Vvi5g641 786783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g641 453 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 293 444 - -
Vvi5g641 453 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 2 296 - -
Vvi5g641 453 Gene3D Transferase(Phosphotransferase) domain 1 103 301 - -
Vvi5g641 453 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 296 - -
Vvi5g641 453 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 293 444 - -
Vvi5g641 453 ProSiteProfiles Protein kinase domain profile. 21 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g641 453 Pfam Protein kinase domain 21 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g641 453 MobiDBLite consensus disorder prediction 337 356 - -
Vvi5g641 453 Coils Coil 401 438 - -
Vvi5g641 453 SUPERFAMILY Protein kinase-like (PK-like) 13 331 IPR011009 -
Vvi5g641 453 MobiDBLite consensus disorder prediction 314 370 - -
Vvi5g641 453 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524
Vvi5g641 453 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
Vvi5g641 453 SMART serkin_6 21 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76673 PF00069 Pkinase 1.00E-59 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g641 K08835 - vvi:100240949 814.683