Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g647 ATGGATTGCAATGCATCCGAAGACGATGGCAACATCCGAAAGATTAGATCTGTTTCAGGGTTCGATTCGCTCGAATCCGATAGCCTTCATGCGTTTCGGCAATGCAACAACGACCCAGATGCCGCCCTAAATTTCGACCGTGATGCCCCTCCGGTAACGGTTAAACGGACCATTACAAGTACTGGAGCCAGGATTCTTACTCAGATTAAGCAAGAGAAGTCTGACGAAGTGGAAGGAGCGGAGTTCCTTCATGGGTTGAAAACGAAGATCAAAGTAAAAGAAGAACCCGATTTGAATGTTGACGGGATTTTTGAAAAGGAGGTGGGTTCAAACCCGCCCCAGGTGGATCGGACTTGGGCGTTGGTGCCTCATAAGGAAATCATGAAAATGTCCTTTGATGAGTTCCTTCGAGCTACGGATGCCCACGTTGAACGAAAGGACCTTGAACGATCAGAAGAGGCTCAAGGGCATCATGGGTTGAAGGACAAGATCAAAGTAAAGGAAGAGCTTGATGTGGGGTTACTCGGCTCAGATAGCATTCGATCATTGGTCAAAAGACCGCCTGATGGATTTCTCGAATCCTATGATGATTTTGTCAAGCCAAAACGTACCAAAGATGAACATCGCAAAGAAAACTCACAATGGCATCCTGGGTTAAAGGAGAAGATCCAAATAAAGGAAGAACTTGATGCGACGTTACTGGGTACAGATTCTGCCAGAAATGAGAACTCAGGAATGCGGGGTGATAGCTTTGTCCAATCAAGGAACGGAAAAGTTATATCTGATGGCAACGGCCGCAATACTCAAAGTGTTCCTTATCACAATCCTCAGAAACCCTTTAATGTGAAGAAAGAGACAGCTCAATTTCTTCCTTATGGCAATCCTCAGAAAAACTTCAATGTGAAGCAAGGGAAAATTGAGGATAGACCAGTTACTTCTGTTTTGGTGGAGGATGGGGATTTTCCAGAAGAACCAGATTGGTTTTTGGTGGGGAGGACCCCCATTATAGGTCTTTCCACCACCAAAGGGAGGAAATTGGTAGACAATGAGATAGTCCATTTTTCTTTTCCTTCTGCTGATTTGAGAAATAAATGTAACTCAAAATGGGTTGCGAAGGCTGCTTCTGCAGCGTCTGCTATAGTTCGCTTCTCAACCAAACGTTCTGGAGAGATTGGTAGGCTGCCAATGGAGTGGACAAAGTGCATTATTCCACTGGTAAATTCTTCAAAGGTTAAGGTACTTGGTCGATGTGTAGCTGCACCAATAATTCTTCGATTGATGCAGGAAATAGTGTTGTATGTTAGCTTTTATATTCACCAGTCAGTCTTCACTGAGGGGAATAAGTCTTCATGGAGGCTAGATGCGGCCCCAAACATTGACTCCACAGTTTACCCTCTGCCAACTCTGTTCAAACTGCTGCAAATTAAACCATTTCAGGAGGCTGAATTCACCCCAGAGGAACTTGATTCAAGGAAACGTAAACTAAATCTAGAGGGTGATACAGATGAAGCTCCATCAATGTTGCCTATAGTGAAACAAAAAAAGGGTTGCCAACAGTATCCTGAACAAAACAATGATGAACAGGCTCTCTCAGAATCATCTCTAAATAAGCTTGTTGGGGCTGCAGATCAATATAACTTGGAGGAGATGGAGTCCCCAAGTACACTCATGTGTGATTTAAGGCCCTATCAGAAACAAGCTCTCTACTGGATGTCTGAATTGGAGAAGGGAAGTGATGCTGAGCAAGCACCAAAAACTCTTCACCCATGCTGGGCTGCCTATCAAATATGTGATGAGAGGGCTTCTGCAATCTATGTGAACATCTTCTCAGGAGAAGCAACTACACAACTACCCACAGCAATACATATGGCAAGAGGAGGAATTTTAGCAGATGCAATGGGGCTAGGGAAGACTGTGATGACAATTGCCCTAATACTGGCAAGACCAGGCAGGAGAAGCTCTGGCGGAACTCTTATTGTTTGTCCCATGGCCTTGTTAAGTCAGTGGAAGGATGAGCTGGAAACACATTCAAAGCCAGAAAGTATTTCTATTTTTATCCATTATGGTGGAGACAGAACCAATGACCCAAAGGTGATATCAGAACATGATGTGGTCTTGACAACATACGGTGTCTTAACTTCAGCTTATAAGAATGATGAAAATAGCAGCATTTTCCACAGAGTTGAGTGGTATAGGGTGGTGTTAGATGAAGCCCACACTATTAAATCCTCAAAGACCCTCAGTGCTCAGGCTGCTTTTGCATTACCTTCGCATTGCAGGTGGTGCCTGACGGGTACTCCCCTTCAGAATAATTTGGAAGATCTCTACAGCCTCCTATGCTTCTTGCATGTTGAGCCATGGTGTAACTGGGCTTGGTGGTACAAATTGATCCAAAAGCCTTATGAGTGTGGTGATCAGAGAGGGTTGAGGTTAATTAAAGCTATTTTGAGACCGCTGATGCTGAGGAGAACAAAGGACACAAAGGATAAAGAAGGAAGGCCCATACTCGTTCTTCCTCCAACTGACATTCAAGTCATCGAGTGTGAACAATCAGAAGCTGAACATGATTTTTATGATGCCCTTTTCAAGAGATCTAAAGTTCGGTTTGATCAATTTGTTGAACAAGGCAGAGTTCTTCACAACTATGCGTCTATCCTTGAGCTACTACTTCGACTGAGGCAATGCTGCAACCACCCATTTCTTGTTATGAGCCGAGGTGATACACAACAGTATGCAGACTTGAGTAAGCTTGCAAGAAAGTTCCTTGAAAACAATCCTTGCTCTGACACTTCAAATCACTCCATTCCTACCCGGGCATTTGTTGAAGAGGTCGTTGGGGGAATTAGACGGGGTGAAAATACAGAGTGCCCTATATGCCTAGAGTCTGCAGATGACCCAGTGCTCACACCATGTGCACATCTGATGTGCAGGGAATGCCTACTTTCAAGCTGGAGGACCCCCTTGAGTGGGCTATGCCCAATATGTCGGAAACTGCTAAAAAAAACAGATCTCATAACATGCCCATCAGAAAACCGATTTAGAATTGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAGATCTCTGAACTTTTACATTGCTTGGAGCGTATTTCCCAGTCAAGAATTGGTGAGAAGAGCATTGTGTTTAGCCAATGGACTTCATTTTTAGATCTCTTGGAGATCCCATTGAGAAGGAGAGGAATCGGATTCTTAAGGTATGATGGAAAAGTGGTTCAGAAACAGAGGGAGAGGATTTTGAAGGAGTTCAGTGAGACTGAAGAGAAAACGGTATTGCTAATGTCACTGAAAGCCGGTGGTGTCGGCTTAAATCTAACAGCAGCCTCCAATGTATTCCTAATGGATCCCTGGTGGAACCCTGCAGTAGAGGAGCAAGCGATAATGCGAATTCACCGCATTGGACAAGAGCGAACAGTTCGTGTCAGAAGATTTATTGTGAAGGACACGGTGGAGGAACGGATGCAGCAAGTGCAAGCAAGGAAACAGCGCATGATCACCGGAGCCCTCACCGATGAGGAAGTTCGAACTGCCAGGATTGAGGAGCTCAAAATGCTACCCAGCGCTGGAGTTAACCGCCGTCCTCCCAGCAGGCTCCAACGCAGAGCTCCCTCCTCTTTGCAGATCAGTCCGGCAGCCGATTGGAAAGTTGCGATACCGCTATTGTCGCCGCTGGCCACATCGCCGTCCTCGCCGAAACTGATTGATCGGACGGCGGAGGTGAAGCCTAAAGAGGAGCCGCGGCAGATGAAGGAGGGGGAGAAGCCAGTGTTCAAGAAGTGGCAGCACCCAGCGGCTCCGTTCTGCTATGAGCCGGCGTCGTTTGTACGGTCGTTCGTGCCGGTGTAG 3864 45.73 MDCNASEDDGNIRKIRSVSGFDSLESDSLHAFRQCNNDPDAALNFDRDAPPVTVKRTITSTGARILTQIKQEKSDEVEGAEFLHGLKTKIKVKEEPDLNVDGIFEKEVGSNPPQVDRTWALVPHKEIMKMSFDEFLRATDAHVERKDLERSEEAQGHHGLKDKIKVKEELDVGLLGSDSIRSLVKRPPDGFLESYDDFVKPKRTKDEHRKENSQWHPGLKEKIQIKEELDATLLGTDSARNENSGMRGDSFVQSRNGKVISDGNGRNTQSVPYHNPQKPFNVKKETAQFLPYGNPQKNFNVKQGKIEDRPVTSVLVEDGDFPEEPDWFLVGRTPIIGLSTTKGRKLVDNEIVHFSFPSADLRNKCNSKWVAKAASAASAIVRFSTKRSGEIGRLPMEWTKCIIPLVNSSKVKVLGRCVAAPIILRLMQEIVLYVSFYIHQSVFTEGNKSSWRLDAAPNIDSTVYPLPTLFKLLQIKPFQEAEFTPEELDSRKRKLNLEGDTDEAPSMLPIVKQKKGCQQYPEQNNDEQALSESSLNKLVGAADQYNLEEMESPSTLMCDLRPYQKQALYWMSELEKGSDAEQAPKTLHPCWAAYQICDERASAIYVNIFSGEATTQLPTAIHMARGGILADAMGLGKTVMTIALILARPGRRSSGGTLIVCPMALLSQWKDELETHSKPESISIFIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSSKTLSAQAAFALPSHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWYKLIQKPYECGDQRGLRLIKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQVIECEQSEAEHDFYDALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCNHPFLVMSRGDTQQYADLSKLARKFLENNPCSDTSNHSIPTRAFVEEVVGGIRRGENTECPICLESADDPVLTPCAHLMCRECLLSSWRTPLSGLCPICRKLLKKTDLITCPSENRFRIDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILKEFSETEEKTVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARIEELKMLPSAGVNRRPPSRLQRRAPSSLQISPAADWKVAIPLLSPLATSPSSPKLIDRTAEVKPKEEPRQMKEGEKPVFKKWQHPAAPFCYEPASFVRSFVPV* 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7206104 7216168 - Vvi5g647 Vvi5g647 786789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g647 1287 Pfam Zinc finger, C3HC4 type (RING finger) 953 1000 - -
Vvi5g647 1287 ProSitePatterns Zinc finger RING-type signature. 971 980 IPR017907 -
Vvi5g647 1287 CDD SF2_C_SNF 1024 1151 - -
Vvi5g647 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 823 IPR027417 -
Vvi5g647 1287 MobiDBLite consensus disorder prediction 1234 1262 - -
Vvi5g647 1287 Pfam SNF2-related domain 563 901 IPR000330 GO:0005524|GO:0140658
Vvi5g647 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 1182 IPR027417 -
Vvi5g647 1287 SMART HIRAN_2 330 438 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g647 1287 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 494 1191 - -
Vvi5g647 1287 SMART helicmild6 1057 1140 IPR001650 -
Vvi5g647 1287 Pfam HIRAN domain 333 434 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g647 1287 Gene3D - 612 824 IPR038718 -
Vvi5g647 1287 PANTHER DNA REPAIR PROTEIN RAD5B 494 1191 - -
Vvi5g647 1287 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1026 1188 IPR001650 -
Vvi5g647 1287 SUPERFAMILY RING/U-box 952 1005 - -
Vvi5g647 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 929 1019 IPR013083 -
Vvi5g647 1287 SMART ring_2 956 995 IPR001841 -
Vvi5g647 1287 CDD DEXDc_SHPRH-like 560 823 - -
Vvi5g647 1287 Pfam Helicase conserved C-terminal domain 1030 1140 IPR001650 -
Vvi5g647 1287 MobiDBLite consensus disorder prediction 1242 1262 - -
Vvi5g647 1287 ProSiteProfiles Zinc finger RING-type profile. 956 996 IPR001841 -
Vvi5g647 1287 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 618 785 IPR014001 -
Vvi5g647 1287 SMART ultradead3 556 802 IPR014001 -
Vvi5g647 1287 Gene3D - 839 1199 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g647 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] - vvi:100264745 2378.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g389 ECH 223 965 RAD5/RAD16-like Gene Family AT1G05120 69.0 4.6e-306 1047.3
Vvi10g65 . 61 679 RAD5/RAD16-like Gene Family AT1G05120 50.8 1.1e-190 664.1
Vvi10g66 ECH 1 129 RAD5/RAD16-like Gene Family AT1G05120 58.0 4.3e-38 157.1
Vvi10randomg30 . 497 1188 RAD5/RAD16-like Gene Family AT1G11100 58.2 1.3e-241 833.6
Vvi10g809 . 256 908 RAD5/RAD16-like Gene Family AT1G11100 55.2 7.9e-207 718.0
Vvi10g809 . 128 807 RAD5/RAD16-like Gene Family AT1G50410 55.8 7.3e-235 810.8
Vvi10randomg30 . 531 1087 RAD5/RAD16-like Gene Family AT1G50410 51.6 1.8e-185 646.7
Vvi10randomg30 . 497 1186 RAD5/RAD16-like Gene Family AT1G61140 61.3 9.5e-264 907.1
Vvi10g809 . 201 906 RAD5/RAD16-like Gene Family AT1G61140 54.5 1.3e-223 773.9
Vvi10g809 . 244 898 RAD5/RAD16-like Gene Family AT3G16600 52.1 4.1e-179 625.2
Vvi10g809 . 188 805 RAD5/RAD16-like Gene Family AT3G20010 52.7 3.6e-211 732.3
Vvi6g1145 . 1 1026 RAD5/RAD16-like Gene Family AT5G22750 73.1 0.0e+00 1484.2
Vvi5g647 . 326 1191 RAD5/RAD16-like Gene Family AT5G22750 55.5 8.6e-296 1013.4
Vvi5g647 . 314 1191 RAD5/RAD16-like Gene Family AT5G43530 71.9 0.0e+00 1318.9
Vvi6g1145 . 108 1024 RAD5/RAD16-like Gene Family AT5G43530 53.2 5.5e-276 948.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14866 PF00176 SNF2_N 5.00E-81 CL0023 Vvi TR