Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g65 ATGTCTGCAAAAAATCAAAAACCTCACAAAAACCCTCACAGTTCCTTCAATTTTTTTCCTCCCCGCACGAATCTCTCCAAAAGGGGAACTGGGTTAAGCTTATATGTGGTGCCAGCTTCGAGGTGCGAGAAAGTTGATTGCATTGACTGTGCTGCGGACGCTTCGGTAGTGAGCGCTGTGAATGAAGGAATTGAGGCGGCTAGAGAGATTGTGCCGCTTCGAAGACCTTGGGTAATGATCAGTGTTAACGATAATGAAGATCTTCATTTTCGCAAAGCCGAATTTGATCCAGCAGACTGTCCTCCAGATTGTTCAAGGCCATGTGAGGTGGTTTGTCCTGCTAATGCAATTTCACTGGTAGAAGGGAAATCAACAGTAGAACTTCCCCACAGTACAAGATCACCTGGTGCATTGAAGGGTGGAGTTATAACCGAACGCTGCTATGGCTGTGGCCGGTGCTTTCCTGTTTGCCCATTTGACAAAATAAGTGTAGTTACATATGTAAGAAATGCAACTGCCACAACTGAACTTCTCAAGAGAGACAACGTTGACGCTGTAGAGATACATACAAGTGGAAGGCAGAGTGCTTTCTTTAGAGAACTTTGGAATCATTTGGGAGATGCAATTAGGTATCTGAGACTGGTAGCAGTTAACTTACTTGATATCGGGGATTCCACGATATCTTCAATGAACACAATGTACTCTATCATGGAACTGCAGTTGGATTGCTACAACTTATGGCAGGTGAGCCCATGTTGCTTTAAGCTTTGA 771 44.23 MSAKNQKPHKNPHSSFNFFPPRTNLSKRGTGLSLYVVPASRCEKVDCIDCAADASVVSAVNEGIEAAREIVPLRRPWVMISVNDNEDLHFRKAEFDPADCPPDCSRPCEVVCPANAISLVEGKSTVELPHSTRSPGALKGGVITERCYGCGRCFPVCPFDKISVVTYVRNATATTELLKRDNVDAVEIHTSGRQSAFFRELWNHLGDAIRYLRLVAVNLLDIGDSTISSMNTMYSIMELQLDCYNLWQVSPCCFKL* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 745679 748011 - Vvi5g65 Vvi5g65 786207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g65 256 Pfam 4Fe-4S binding domain 142 160 IPR017896 -
Vvi5g65 256 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 44 169 - -
Vvi5g65 256 Gene3D - 86 199 - -
Vvi5g65 256 SUPERFAMILY 4Fe-4S ferredoxins 78 176 - -
Vvi5g65 256 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 91 122 IPR017896 -
Vvi5g65 256 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 138 167 IPR017896 -
Vvi5g65 256 MobiDBLite consensus disorder prediction 1 22 - -
Vvi5g65 256 Pfam Iron-Sulfur binding protein C terminal 177 249 IPR021039 -
Vvi5g65 256 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 IPR017900 -
Vvi5g65 256 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER 44 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g65 - - - vvi:100255010 504.597
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g65 . . Bda03g01182 . Bpe04g01115 . Bma04g01126 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0721 . . . . Csa06g01740 Chy11g01566 . . . . . . . . . Sed04g3104 . . . Cma17g00367 . Car17g00340 . . Bhi12g01926 Tan06g2753 Cmetu11g0714 . . . Lcy12g0804 . . . . . . . Lsi09g01487 . . Cme11g02078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008411 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 35