Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g672 ATGAGATTTGGCCTTTGCTGGGCAATTTTCTTTCAAAATATCCATCTCCCCCTCCAAACTAGGTGCTGGATTCCTGTTGCCTATCCCAAATCCATGGATTCCTTCGACGATGATACTTGGGATTTTCTTAATCATAAATTGATAGACGACGTCACATCCAACGATCTCTCTTGGATAAACGACGGTGCTGGTGTCGATATTGATCTTTCGCGTATTTGTGCTGCGTCGCAAGAAAATGAAGGCAGACAGAAGAGGGGACGCAATGATTCATCCACCAGGCCTGGAACCAAAGCTTGCCGTGAGAAATTGCGAAGGGAAAGATTGAATGACAGGTTTCTAGACTTGAGTTCCATTTTAGAACCTGGTAAATCTGCCAAAACTGACAAATTGGCCATACTTGGGGATGCCATCCGAGTACTGAACCAGCTGAGAAATGAAGCTAAGGATCTTGAAGATGCAAATGAAAAGCTACAAGAAGAGATAAGAAGTTTAAAGGCAGAGAAGAATGAACTTCGTGAAGAGAAACTCTTGCTAAAGGCGGATAAAGAAAGGATAGAGCAGCAGATGAAAGCAATTTCTGCTCCAGCTGCAGGGTTTTGGCCTACCTACCCTGCAGCAACACATCATACTGGGGCAAATAAGTCGGCTGTTTTCCCGAGCTATGGCTTGTTTCCAATGTGGCAATATATACCTTCATCTGCTCTTGATACTTCCCATGATCATGAGCTGAGGCCACCTGCAGCATAG 747 44.44 MRFGLCWAIFFQNIHLPLQTRCWIPVAYPKSMDSFDDDTWDFLNHKLIDDVTSNDLSWINDGAGVDIDLSRICAASQENEGRQKRGRNDSSTRPGTKACREKLRRERLNDRFLDLSSILEPGKSAKTDKLAILGDAIRVLNQLRNEAKDLEDANEKLQEEIRSLKAEKNELREEKLLLKADKERIEQQMKAISAPAAGFWPTYPAATHHTGANKSAVFPSYGLFPMWQYIPSSALDTSHDHELRPPAA* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7500048 7507755 - Vvi5g672 Vvi5g672 786814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g672 248 MobiDBLite consensus disorder prediction 78 99 - -
Vvi5g672 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 167 IPR036638 GO:0046983
Vvi5g672 248 PANTHER TRANSCRIPTION FACTOR BHLH104 32 248 - -
Vvi5g672 248 Coils Coil 133 188 - -
Vvi5g672 248 CDD bHLH_AtILR3_like 97 172 - -
Vvi5g672 248 Pfam Helix-loop-helix DNA-binding domain 95 143 IPR011598 GO:0046983
Vvi5g672 248 PANTHER BHLH TRANSCRIPTION FACTOR 32 248 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vvi5g672 248 SMART finulus 98 149 IPR011598 GO:0046983
Vvi5g672 248 Gene3D - 96 176 IPR036638 GO:0046983
Vvi5g672 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g672 Vvi14g564 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14867 PF00010 HLH 4.40E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g672 - - vvi:100264856 417.157