Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g674 ATGTGGACATGCAAAAGAAACCACATGACCAACGGTGGACTGCTGGCCTATCCTAGAAAGTTCCTTTTTTTATTTTTTATTTTTTTGAACCAGCCCATTAGTTTCGAGTTTGGAGAAAGAAGCCATTGCGAGTGTGCGGTTTGCTTGAATGAGTTTCAAGAAGAAGAGAAGCTAAGAATCATACCAAACTGCAGTCACATATTTCATATAGATTGCATAGACGTGTGGCTTCAAAGCAATGCTAATTGCCCACTTTGCAGAACAAGCATTTCAACCACACCCCGAATTGTGCCTAAAAAGGCAAGGAAGTTTCATCATGTTGCAAGCATGGGTGATGAGTGCATTGACACTAGAGGCAAAGATGATCAGTTCTCAATCCAACCCATCAGGAGGTCTTTTTCAATGGACTCATCCAACGACAGGCAGCTGTATTTAGCAATTCAAGAGATTTTGCAACAGAACAGGCCTGTCAGTGACTTCAGCCCTAGTGAAGGTTGCAGCAGCAGATTCCGAAGATCATTCTTTTCTTTTGGCCATGGAAGGGGATCCAGAAGTGCAGTCCTGCCAATTCCTATGGACCCATAG 585 43.25 MWTCKRNHMTNGGLLAYPRKFLFLFFIFLNQPISFEFGERSHCECAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRIVPKKARKFHHVASMGDECIDTRGKDDQFSIQPIRRSFSMDSSNDRQLYLAIQEILQQNRPVSDFSPSEGCSSRFRRSFFSFGHGRGSRSAVLPIPMDP* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7527981 7529676 - Vvi5g674 Vvi5g674 786816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g674 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 95 IPR013083 -
Vvi5g674 194 SUPERFAMILY RING/U-box 39 98 - -
Vvi5g674 194 CDD RING-H2_PA-TM-RING 44 87 - -
Vvi5g674 194 ProSiteProfiles Zinc finger RING-type profile. 45 87 IPR001841 -
Vvi5g674 194 Pfam Ring finger domain 44 87 IPR001841 -
Vvi5g674 194 PANTHER RING-H2 FINGER PROTEIN ATL16 36 95 IPR044600 GO:0016567|GO:0016740
Vvi5g674 194 PANTHER RING-H2 FINGER PROTEIN ATL16 99 193 IPR044600 GO:0016567|GO:0016740
Vvi5g674 194 SMART ring_2 45 86 IPR001841 -
Vvi5g674 194 PANTHER RING-H2 FINGER PROTEIN ATL16 36 95 - -
Vvi5g674 194 PANTHER RING-H2 FINGER PROTEIN ATL16 99 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g674 Vvi7g540 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g674 - - sly:101249928 191.815