Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g680 ATGGATTGTTTGGATTCCCAAGCCCACAATCTTCATCTTCCCGGGAAACCGCCGATGGGCTTAACGGAAAACAAGTCTCCGACCTTTTTGTCTTCCGGGAACCCGTGCTTGGACTTCTTCTTCCATGTGGTTCCCGATACGTCGTCTGATGATCTGATCCGACGGTTTGAGTTGGCTTGGGAATTCAATCCGCTGACGACGTTAAAACTGATATGCAACTTGAGAGAGGTGAGAGGCACCGGAAAATCTGACAAAGAGGGTTTCTACACGGCGGTTCTCTGGCTCCACGACCACCATCCCAAAACCCTAGCCTGCAATGCTAGGGTGTTGGCCAGCTTCGGTTATTTCAAGGATTTTCTCGAGATTCTCTACCGGCTTCTGGAGGGCCCTAAAATTCGAAGAATCGAAAAGAAAGACTGGCTGGATCGAAAAGGAAGGAAGAAAAATTCCCGGAAAAGGAACTCAATATTCAAGCGAGAAAATAGGCCTGGAGTTGAATTTCCTGTAGAAGAGAAGGATGTGGAGTATATGGTGGAAGAATTTGTGGATAAAGAAAAGGCTAGGGTACTGAGAAAGGAGAGAGAACTTGCTCTTGCCAAAAGAGCCCTGCACAAAGTCAGGGATAGGTTGAGAAAACAAGTACTTGTTCCATTACGTAAGGCCCTGGAGTTGCCAGAGGTTTTCATGTGTTCGAACCAGTGGGGATCACTTCCCTACAACCGTGTGGCTTCAGTGGCCATGAAATCATACAAGAGCCTCTTCTCAAAACATGATACAGAGCGGTTTGGTGTGTATCTTGAGAAAGTGCAAACTGGGAAGGCTAAGATTGCAGCTGGTGCATTACTTCCCCATGAGATTATAGCTTCATTGAATGAGGAGGATGGCGAGAAAGTTGCAGAGCTTCAGTGGGCGAGAATGGTGGAAGATTTATCAAAGAATGGGAGGCTCACAAATTGCAGTGCGGTATGTGACGTATCAGGAAGTATGAGTGGAACTCCAATGAAGGTGTGTGTGGCTCTGGGGCTGTTAGTTTCAGAGCTCAGTGAAGATCCATGGAAAGGTAATGTAATTACTTTCAGTGCAAGTCCTGAGCTTCACAAGATCCAAGGAGACAGCCTTGTATCCAAGACTGAATTTGTGAGGATGATGGAATGGGGTGCGAACACTGATTTTCAGAAAGTTTTTGACAGAATCTTACAAGTAGCAGTGGAGGGAAATCTGAGTGAAGATCAAATGATAAAGAGGGTTTTCGTTTTCACTGATATGGAGTTTGATGAAGCTTGCATCTCAGAAACCTTGTTTTTGGAAGGAGGTGGAATTCTGACCCCTCAGGATGTGATGGAATTAGCCATCTCTGGTGAAGATTACAAGAAACTTGTTCTATTTGATTAA 1392 45.33 MDCLDSQAHNLHLPGKPPMGLTENKSPTFLSSGNPCLDFFFHVVPDTSSDDLIRRFELAWEFNPLTTLKLICNLREVRGTGKSDKEGFYTAVLWLHDHHPKTLACNARVLASFGYFKDFLEILYRLLEGPKIRRIEKKDWLDRKGRKKNSRKRNSIFKRENRPGVEFPVEEKDVEYMVEEFVDKEKARVLRKERELALAKRALHKVRDRLRKQVLVPLRKALELPEVFMCSNQWGSLPYNRVASVAMKSYKSLFSKHDTERFGVYLEKVQTGKAKIAAGALLPHEIIASLNEEDGEKVAELQWARMVEDLSKNGRLTNCSAVCDVSGSMSGTPMKVCVALGLLVSELSEDPWKGNVITFSASPELHKIQGDSLVSKTEFVRMMEWGANTDFQKVFDRILQVAVEGNLSEDQMIKRVFVFTDMEFDEACISETLFLEGGGILTPQDVMELAISGEDYKKLVLFD* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7611469 7613480 + Vvi5g680 Vvi5g680 786822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g680 463 Coils Coil 182 209 - -
Vvi5g680 463 Pfam Domain of unknown function (DUF2828) 199 428 IPR011205 -
Vvi5g680 463 Pfam Domain of unknown function (DUF2828) 22 205 IPR011205 -
Vvi5g680 463 PANTHER OS06G0652100 PROTEIN 205 428 IPR011205 -
Vvi5g680 463 PANTHER OS06G0652100 PROTEIN 13 205 IPR011205 -
Vvi5g680 463 PIRSF T31B5_30_vWA 2 205 IPR011205 -
Vvi5g680 463 PIRSF T31B5_30_vWA 429 463 IPR011205 -
Vvi5g680 463 PIRSF T31B5_30_vWA 200 432 IPR011205 -
Vvi5g680 463 SUPERFAMILY vWA-like 322 426 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g680 - - - sspl:121780627 506.908
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .