Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g70 ATGCATCTCAAGCTGAAGCTCTCTTCTCCCTCTTCTCCGTCCAACTTCTCTCTTTACTCTCCTTCTCAAAACCCTAGCTCCTCCAAATTTTCCTTTAAAGTACCAATTGTACCCCTCCACTCCTCACTCTCACCTCTCACCCTTCCTCCATGCGCCTCCAAGGACTCCTCCTCCCCACTCCTCGAGCAAAAGCCTCATTCCTCCGGCTTCGGATCAGAGCCGCAGTCGCCGCCGGAAGTTCTTACGGTCCGCCGTCCGATGAAGGAATATTCCGGAGACGATGATGAGTCCAGCAACGGAGATGATGTGGATGAGGACACGTTCTCTTCCTCGCCGATCGATGCCGGACTTGCTGAATTTGCGAAGAAGTTGCCAATGTTTGAGCCGCAGAGAGCGGAGTTGAGCTCTGAGGAGAGGCCGCTTTTGGTGAATTTGGACTTAGCGTTGTATAGAGCCAAGGTTTTGGCGAGGAATTATCAGTTTGAAGAAGCGGAGAAGATTCTGCAGAAGTGTATATACTATTGGCCAGAAGATGGACGGCCGTATGTGGCTTTAGGGAAGATCCTGAGCAAACAGTCGAAAACTTCGGAAGCTAGAGCTGTTTATGAGAAAGGCTGTCAGGCTACTCAAGGTGAAAATCCTTACATCTGGCAGTGCTGGGCTGTGCTGGAAAATAAGATGGGGAACATTAGGAGAGCAAGAGATTTGTTTGATGCTGCCACAGTTGCTGATAAGAGGCATGTTGCTGCCTGGCATGGGTGGGCAGTTTTAGAGTTAAAACAGGGGAATATAAAGAAGGCAAGGCATCTTCTTGCTAAAGGTCTTAAATATGGTGGTGGAAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAAAGCAAATCGGCATGAGCAGGCTCGGTATTTGTTCAAGCAGGCCACCAAGTGCAATCCCAAGAGCTGTGCCAGTTGGCTTGCATGGGCACAATTGGAGATGCAACAGGAAAACAACCATACTGCAAGGCAACTATTTGAGAAAGCAGTCCAGGCAAGCCCCAAGAATAGGTTTGCATGGCATGTATGGGGAGTTTTTGAAGCTAATCTGGGCAATGCTGACGTGGGAAGGAAACTTTTAAAGATAGGCCATGCAGTAAATCCAAGGGATCCTGTTCTCCTTCAGTCCCTTGCTTTACTGGAATACAAATATTCAACTGCAAATCTTTCTCGAGTGCTGTTCAGGAGAGCATCCGAATTGGATCCAAGGCATCAGCCAGTATGGATTGCTTGGGGATGGATGGAGTGGAAAGAAGGAAACATAGCCACAGCAAGGGAAATGTATCAAAGAGCACTGTCCATTGACTCAACTACTGAAAGTGCTGCTCGTTGTCTTCAGGCTTGGGGTGTTTTAGAAGAGAGAGCTGGTAATCTATCAGCAGCTCGGAGATTATTCAGATCCTCCCTAAATATAAATTCCCAGAGTTACATAACATGGATGACATGGGCCTCATTTGAAGAAAACCAAGGAAATGCTGTTCGTGCTGAGGAAATTCGTGACCTCTATTTCCAGCAGCGCACAGAAGTCGTGGATGATGCTTCATGGGTTATGGGGTTCTTGGACATCATCGATCCAGCTCTAGACAGCATAAAGAGACTATTGAACCTGGACCAAAACTCATACTACAGAATCCCTGATTCCTCACGAAACATACCAGGAGCTAACGAAGACTCATCTGGCCCTGGCCCTGGCCCTTCCTCTGGAAATCCAGATAGCAAAGACACAGCAAGTGAAAATGGCTTCAACCTGGACGCCTTCATCAGGGAGAAATTATCCCTTGATCCATCAAATCTTGATGTTCAAATGCAAACACATGAGACTACTGTTCCAAGACGAGTTAAACTTCCAAGAAGGATAAAGAGATTAGAGAACACTCAGAGCCGAACCACGACAGCAGTGACACAATCCAGAGTTTAA 1956 47.03 MHLKLKLSSPSSPSNFSLYSPSQNPSSSKFSFKVPIVPLHSSLSPLTLPPCASKDSSSPLLEQKPHSSGFGSEPQSPPEVLTVRRPMKEYSGDDDESSNGDDVDEDTFSSSPIDAGLAEFAKKLPMFEPQRAELSSEERPLLVNLDLALYRAKVLARNYQFEEAEKILQKCIYYWPEDGRPYVALGKILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWKEGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYITWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLDQNSYYRIPDSSRNIPGANEDSSGPGPGPSSGNPDSKDTASENGFNLDAFIREKLSLDPSNLDVQMQTHETTVPRRVKLPRRIKRLENTQSRTTTAVTQSRV* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 783314 788171 + Vvi5g70 Vvi5g70 786212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g70 651 MobiDBLite consensus disorder prediction 7 30 - -
Vvi5g70 651 SUPERFAMILY TPR-like 393 518 IPR011990 GO:0005515
Vvi5g70 651 MobiDBLite consensus disorder prediction 1 30 - -
Vvi5g70 651 Gene3D Tetratricopeptide repeat domain 392 535 IPR011990 GO:0005515
Vvi5g70 651 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 9 640 IPR044624 GO:0003729|GO:0006397
Vvi5g70 651 SMART hat_new_1 296 328 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 398 430 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 432 467 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 330 362 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 193 226 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 262 294 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 469 501 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 364 396 IPR003107 GO:0006396
Vvi5g70 651 SMART hat_new_1 228 260 IPR003107 GO:0006396
Vvi5g70 651 MobiDBLite consensus disorder prediction 42 109 - -
Vvi5g70 651 SMART tpr_5 384 417 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 145 178 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 316 349 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 282 315 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 179 212 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 455 488 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 214 247 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 248 281 IPR019734 GO:0005515
Vvi5g70 651 SMART tpr_5 418 451 IPR019734 GO:0005515
Vvi5g70 651 Pfam Tetratricopeptide repeat 318 357 - -
Vvi5g70 651 Pfam Tetratricopeptide repeat 426 482 - -
Vvi5g70 651 MobiDBLite consensus disorder prediction 46 75 - -
Vvi5g70 651 SUPERFAMILY TPR-like 159 397 IPR011990 GO:0005515
Vvi5g70 651 MobiDBLite consensus disorder prediction 558 591 - -
Vvi5g70 651 Gene3D Tetratricopeptide repeat domain 128 391 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g70 - - - vvi:100263733 1258.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30