Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g702 ATGAGCGAAGCATTGAGGAGAGACTACCAGGTGTGCGAAGAGATCGGCCGGGGGCGATTCGGAACTGTTTTCCGGTGCATCTCGGTGGAGTCCGGCGACTCTTTCGCTTGCAAATCCATCGATAAAATCATCCTTGCCGACGATTCCATCGACCGCCAATGCATCGAGGGGGAGGCGAAGATTATGCATCTTGTCTCCGGTCACTCTAACGTTGTTCAGATCTTCGACGTCTACGAAGACGACACTCACCTCGACATCATTCTCGAGCTCTGTAGCTCCTCCGATCTCTTCGATCGTATTGCCGACCGAGTCTTTTCCGAGGCAGAGGCGGCCGCTGTGATGAAGCCGCTGATGGAAGCGGTGGCTCACTGTCACCGACGAGGCGTGGCTCACCGGGACATTAAGCCGGATAATATCTTTTTTGATGAGTGGAATCGTTTGAAACTTGGGGATTTTGGCTCGGCCGAGTGCTTTAGGGAGGGCGAGTTGATGAGCGGAATCGTCGGGACGCCGTACTATGTGGCGCCGGAGGTAATCGCCGGAAGGGAGTACAGTGAGAAGGTTGATGTTTGGAGTGCGGGGGTGATTTTGTACATAATGCTGGCCGGTATCCCTCCTTTTTACGGCGAGTCTTCGATGGAGATTTTCGAGGCGGTGCTTCGCGCGAATCTCCGGTTCCCGGCGAGAATATTTCACTCGGTATCAACGGCAGCAAAGGATCTCTTGAGGAGGATGATCTGTAAGGACGTTTCAAGGCGTTTCACGGCAGAACAAGTTCTAAGACATCCATGGATGACAAGCGTTGGTGAGACAAGAACAGAGGCAGATCTAACTTGA 837 53.17 MSEALRRDYQVCEEIGRGRFGTVFRCISVESGDSFACKSIDKIILADDSIDRQCIEGEAKIMHLVSGHSNVVQIFDVYEDDTHLDIILELCSSSDLFDRIADRVFSEAEAAAVMKPLMEAVAHCHRRGVAHRDIKPDNIFFDEWNRLKLGDFGSAECFREGELMSGIVGTPYYVAPEVIAGREYSEKVDVWSAGVILYIMLAGIPPFYGESSMEIFEAVLRANLRFPARIFHSVSTAAKDLLRRMICKDVSRRFTAEQVLRHPWMTSVGETRTEADLT* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7967257 7969061 - Vvi5g702 Vvi5g702 786844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g702 278 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1-LIKE 2 275 - -
Vvi5g702 278 ProSiteProfiles Protein kinase domain profile. 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g702 278 Gene3D Phosphorylase Kinase; domain 1 11 96 - -
Vvi5g702 278 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 275 - -
Vvi5g702 278 PIRSF ILK 2 262 - -
Vvi5g702 278 Pfam Protein kinase domain 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g702 278 Gene3D Transferase(Phosphotransferase) domain 1 97 277 - -
Vvi5g702 278 SUPERFAMILY Protein kinase-like (PK-like) 5 269 IPR011009 -
Vvi5g702 278 SMART serkin_6 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g702 278 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi5g702 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi5g702 278 CDD STKc_CAMK 8 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g702 - - K08794 vvi:100252772 560.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g702 Vvi14g598 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76675 PF00069 Pkinase 7.30E-72 CL0016 Vvi PK