Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g704 ATGAGTAGCGACTCGAGGACTGTTGTTTGGTTTAGGAGGGATCTCAGGGTTGATGATAATCCTGCTTTAGCCACTGCGGCTAAGGAGGGTAGTGTTCTCCCTGTCTTTATATGGTGTCCTAAAGAAGAAGGACAATTCTACCCAGGTCGGGTTTCAAGGTGGTGGCTGAAGCAGTCTCTTATGCACTTGAAACAGTCATTGAGATCTCTTGGGGCTGACCTTCTTTTGATCAAAGCCGAATCTACCATCGAGGCTCTTCTGGAGTGTATCCATGCTATTGGAGCCACAAAACTAGTATATAATCATCTTTATGATCCCATTTCCCTTGTTCGTGACCACAGCATCAAACAAAAACTGATGGAGCTTGGCATGTCAGTGCAAAGCTACAATGGAGATTTATTGTATAAGCCATGGGACATATATGATGATAAAGGAAATGCTTTTACTACTTTTGAGGCTTATTGGAACAAGTGCTTGAGCATGCAGATGGAATTTGTTTCACTTCTTCCTCCATGGCGATTAGTGCCAGCTGCAGGGAAAGTTAACAATTGTTCGATTGAGGAATTGGGTCTTGAAGATGAGTCAGAAAAATCTAGCAATGCTTTACTAGGAAGAGGATGGTCTCCTGGTTGGAGCAATGCTGACAAGGCTCTAACTGAATTTATTGAGCAGCATCTGTTTGACTACTCAAAGAAAAGGCTCAAGGTGGAGGGGAATTCCACATCTCTCTTGTCTCCATATCTTCATTTTGGAGAATTAAGTGTGAGGAAAGTTCTACATTCCGTCCGAATGAAGCAATTACTGTGGGTGAAAGAAGGGAACTCTGTCTGGGAAGAGAGTGTGGATCTTTTTCTCAGGGCAATTGGCTTAAGAGAATATTCACGGTACCTTTGTTTCAACTTCCCATCCACTCATGAGAGACCGTTGCTTAGCAACTTGAAACACTTCCCTTGGCATGCTCACCATGTCCACTTTAAGGCTTGGAGACAGGGTCGTACTGGTTACCCATTAGTAGATGCAGGAATGAGAGAGCTTTGGGCAACTGGGTGGATTCATAATAGAATAAGAGTGATCGTTTCAAGTTTTGCTGTCAAGTTTCTGCTTCTTCCATGGAAATGGGGGATGAAATACTTCTGGGACACACTTTTAGATGCTGATTTGGAAAGTGATATCCTTGGTTGGCAGTATATCTCAGGGAGCTTACCTGATGGTCACGAGCTTGACCGTTTGGACAGCCCAGAGATTCAAGGCTCCAACTATGATCCAGAGGGTGAATATGTGAGACATTGGCTGCCTGAGCTAGCAAGAGTGCCCACTGAGTGGATCCATCATCCTTGGGATGCTCCCTTTACTGTGCTTAAATCTGCAGGGGTAGAGTTGGGACAAAACTATCCAAAACCTATTATTGAGATAGATTTGGCTAGAGAGCGTCTAACTGAAGCTATATTTATGATGTGGGAAAAGGATGCTGCCACAAAAGTTGCAAACTCAAATGGGACAAATGAAGAAGTTGTCGATAACTCTGATAGTATTGAAAACTTATCCATTGCAAACGTCAGTGTGAAAGAAAAGACTCCTTGCCCTACCAGTTCATCCCATGATCAGAGGGTGCCCACATTTCAGAATTCCAAGAGTGGTTTGTTAAATAGGAAGAGGGCAAAGTGTATTGAAGATGAGAAGCTGTCTCAAAATAACCTGCACAACTACGACCATGGATGTGGGACTTCAAGAGCAGATGAAGATTTGCGCTCTACAGCTGAATCTTCTTCAGCCAAGAAGCAGGCCACTAGCAGAACTTCGTTCTCTGTTCCACAGTCTTGTTCCTCATCATCAGAAGGCAATCCTTTGCAGGAGTATGAATCTCCTGGTCTGAAGCAACCATGGCCAGAACAGATTGTCTGGGAAAAAACTTCAAGTAAAGATGGAACTATGGAAGGTTAG 1941 43.64 MSSDSRTVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMHLKQSLRSLGADLLLIKAESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCFNFPSTHERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERLTEAIFMMWEKDAATKVANSNGTNEEVVDNSDSIENLSIANVSVKEKTPCPTSSSHDQRVPTFQNSKSGLLNRKRAKCIEDEKLSQNNLHNYDHGCGTSRADEDLRSTAESSSAKKQATSRTSFSVPQSCSSSSEGNPLQEYESPGLKQPWPEQIVWEKTSSKDGTMEG* 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7973467 7984266 - Vvi5g704 Vvi5g704 786846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g704 646 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Vvi5g704 646 MobiDBLite consensus disorder prediction 588 617 - -
Vvi5g704 646 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Vvi5g704 646 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Vvi5g704 646 Pfam FAD binding domain of DNA photolyase 284 481 IPR005101 -
Vvi5g704 646 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Vvi5g704 646 PANTHER CRYPTOCHROME 5 579 IPR002081 -
Vvi5g704 646 Gene3D - 134 294 - -
Vvi5g704 646 MobiDBLite consensus disorder prediction 573 587 - -
Vvi5g704 646 PANTHER CRYPTOCHROME 2B APOPROTEIN 5 579 - -
Vvi5g704 646 PRINTS DNA photolyase signature 333 349 IPR002081 -
Vvi5g704 646 PRINTS DNA photolyase signature 353 371 IPR002081 -
Vvi5g704 646 Pfam DNA photolyase 7 161 IPR006050 -
Vvi5g704 646 MobiDBLite consensus disorder prediction 522 544 - -
Vvi5g704 646 Gene3D HUPs 8 207 IPR014729 -
Vvi5g704 646 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 195 488 IPR036134 -
Vvi5g704 646 MobiDBLite consensus disorder prediction 566 646 - -
Vvi5g704 646 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vvi5g704 646 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g704 K12119 CRY2; cryptochrome 2 - vvi:100247664 1334.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38