Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g705 ATGTCGTTCAGAGGGTCAAATGCTTCATCTGGCATGGGTGTTGCTGATCACTGCAAAGCCACATACCTGGAACTACAGAGGAAAAAGGTGCACCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAAGTTGTGGTGGAAAAGACTGGTGGTCCAGCTGAGAGCTATGATGATTTCACTGCTTCCTTACCTGAGAATGATTGCCGCTATGCAATTTATGACTTTGATTTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAAAGATCGGTTCAGGCGGGAGCTAGAGGGCATCCATTATGAGATTCAGGCTACTGACCCGACCGAGATGGATCTTGAAGTGCTTAGAGAGCGTGCAAACTGA 432 44.91 MSFRGSNASSGMGVADHCKATYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPENDCRYAIYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFRRELEGIHYEIQATDPTEMDLEVLRERAN* 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7989419 7993613 - Vvi5g705 Vvi5g705 786847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g705 143 SUPERFAMILY Actin depolymerizing proteins 8 142 - -
Vvi5g705 143 PANTHER COFILIN-RELATED 5 143 IPR017904 GO:0015629|GO:0030042
Vvi5g705 143 Pfam Cofilin/tropomyosin-type actin-binding protein 18 141 IPR002108 GO:0003779
Vvi5g705 143 CDD ADF_cofilin_like 10 142 IPR017904 GO:0015629|GO:0030042
Vvi5g705 143 PANTHER ACTIN-DEPOLYMERIZING FACTOR 11 5 143 - -
Vvi5g705 143 SMART adf_2 16 143 IPR002108 GO:0003779
Vvi5g705 143 ProSiteProfiles ADF-H domain profile. 11 143 IPR002108 GO:0003779
Vvi5g705 143 Gene3D Severin 7 143 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g705 K05765 CFL; cofilin - vvi:100242532 277.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g705 Vvi7g554 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g705 . . . . . Bpe14g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00063 . . Bma02g00783 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003181 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 2 3 2 1 1 1 1 2 1 1 2 2 3 2 50