Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g71 ATGGTTGACAACATTCATGAGAACAAGGTCCTAATAAGGGAATTCAATGAAGAAACAGACATTGAAGCAGTGGAGAAGCTTGAGAAGAACTGTGAGATAGGGTATAAAAAGGGGATCTCCATATTTACTAGCATGATGGGTGACCCTTTATGTAGAATTAGGCTCTACCCTGTTCATGTTATGCTGGTTGCTCAGCTGCTCGAAAATGGGGAGCTTGTCGGTGCAGTTCGAGGATGTATCAAGCGTGTGGGGACTGGTTTTGGGGGAACAGATGTGACGATGGGATGCATCCTGGGCCTTCGAGTCTCTCCTAGGCACAGGAGGATGGGCATTGGATTAGGGCTTGTTAAATCAGCAGAGGAATGGATAGAGAGAAATGGAGCACAGTATGCTTTCCTAGCAACCGAGGAGAACAATGTGGCCTCCACCAATCTCTTCACTCTCAAATGCAACTATGTAAAGTTTAGCTCATTAGTCATATATGTTCAACCAGTTAATGATCACCTTGCTGAGGAAGTAGATATTCCCAGAGACATAAAAATCGAGAAGTTGCATATCGAGCAGGCCATTTTCCTCTACAAGAACAGCTTGAAACAAAGAGAGATATACCCAACAGATATTGAGGCCATCTTGAAGGAGAAGCTGAGTATGGGCACCTGGGTGTGTTTCTTCAGAGAGGAAGGATGGGTAGGTTTGCAGAAGAAAGAAGAAAAAGAAGGGGAAATCATGGGTACAGCTCCAAGCTCTTGGGCAATCTTCAGCATATGGAATACCTCTGAGGCATACAAGCTTCAAATAAGGAGGTCAAATCTATTGAAAATATTCCATGCAAGTGTGAGCCATGCAATGGAGAGAATCCTGCCATGCCTGAAACTGCCATTCATGAGTATGAGTACTGAGTCCCATAAAAAACCCTTTGGGTTTCTGTTCCTGTATGGGATTCATGGAGAAGGAGAGAGGGTTGGGGAGCTGATGAAAGGAGTATGGAGGTTTGCGTCAAGAATGGCTGAGAATGTGAAGGACTGCAGTGTGATGATGACTGAGCTAGGAGGGTCTGATCCTCTCAGAGCCCATGTTCCTCAGGGCTCCTCCATGTCATGCATCAATGATCTCTGGTACTTAAAGAGGCTGAACGCCCCCGTGATCTTTACACAAATATGGGCACTGCCACAATCACTTGAAAAAATTGAAGGGGCTAAAGAATATACGAAAGTATTAAAATATTATGTCTTCTCTAAAGAAGTGTTGTTCTGA 1254 44.26 MVDNIHENKVLIREFNEETDIEAVEKLEKNCEIGYKKGISIFTSMMGDPLCRIRLYPVHVMLVAQLLENGELVGAVRGCIKRVGTGFGGTDVTMGCILGLRVSPRHRRMGIGLGLVKSAEEWIERNGAQYAFLATEENNVASTNLFTLKCNYVKFSSLVIYVQPVNDHLAEEVDIPRDIKIEKLHIEQAIFLYKNSLKQREIYPTDIEAILKEKLSMGTWVCFFREEGWVGLQKKEEKEGEIMGTAPSSWAIFSIWNTSEAYKLQIRRSNLLKIFHASVSHAMERILPCLKLPFMSMSTESHKKPFGFLFLYGIHGEGERVGELMKGVWRFASRMAENVKDCSVMMTELGGSDPLRAHVPQGSSMSCINDLWYLKRLNAPVIFTQIWALPQSLEKIEGAKEYTKVLKYYVFSKEVLF* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 788237 792303 - Vvi5g71 Vvi5g71 786213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g71 417 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 10 176 IPR000182 GO:0016407
Vvi5g71 417 Gene3D - 2 174 - -
Vvi5g71 417 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 1 379 - -
Vvi5g71 417 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 8 157 IPR016181 -
Vvi5g71 417 Pfam Acetyltransferase (GNAT) family 64 151 IPR000182 GO:0016407
Vvi5g71 417 CDD NAT_SF 66 133 - -
Vvi5g71 417 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g71 - - - vvi:100241472 773.467
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g71 . . . . . . . . . . . . . Car14g01401 Sed12g0774 . Cpe03g01329 Bhi01g01087 Tan10g1074 Cmetu06g1614 . Hepe05g1384 . Lcy11g1339 . . . . . . . . . . . Lsi05g01594 . . Cme06g00787 . Blo07g00146 . . . Bpe13g00694 . Bma06g01468 . . Cmo14g01621 . . . . . . . . . . . . . Cla05g00704 Cam05g0770 Cec05g0779 Cco05g0772 Clacu05g0760 Cmu05g0726 Cre05g0800 . Csa03g01516 Chy06g00753 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013261 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14871 PF00583 Acetyltransf_1 1.50E-13 CL0257 Vvi TR