Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g715 ATGGTCTCCATCGCCACAATCCCTGCTTTTCCCTGCAACAACACCCGTTCATTCCCTCGCCATTTCCTCACTCGCCGTTCCTTCTCTCGCCATATCCTCACTCGCCGTTCCACACCACCCTCATTCAGTGCTGGAACATGGAGGAGCACAGCCATCACTTCCAAACTCAAAGAAAAGACTGCTTTGGAGTACAGGAAACTTGGGGACTCTGATCTTAATATCAGCGAGATTACTCTTGGAACGATGACATTTGGGGAACAGAATACTGAGAATGAGGCTCATGAGATACTCAGTTACGCGTTTGAGCATGGGATTAATGCTCTGGACACTGCAGAAGCTTATCCAATTCCAATGAAAAAGGAGACACAAGGGAAAACCGATCTGTACATCGCCAGTTGGCTGAAATCTCAACCCCGTGATAAGGTTATTTTGGCAACAAAAGTATGTGGTTATTCAGAGCGATCAAGTTACTTGCGTGACAATGCAAAGGTTTTGCGTGTTGATGCCGCTAATATTAGAGAAAGTGTGGAGAAGAGTCTTAAGCGCCTCAACACTGATTATATTGATCTATTGCAAATTCATTGGCCAGACCGTTATGTGGCATTGTTTGGCGAGTTTTCTTATGATCCTTCAAAATGGAGACCAAGCATACCATTTGTAGAGCAACTCAAGGCCTTTCAGGAACTTATTGATGAAGGAAAGGTACGATATATTGGTGTTTCTAATGAAACTTCATATGGAGTGATGGAATTTGTTCATGCAGCAAAAGTTGAAGGACTTCCAAAAATCGTCAGTATCCAGAACAGCTACAGTTTGCTAGTTAGATGTCGTTTCGAAATTGATCTTGTTGAAGTCTGCCACCCTAACAATTACAACATTGGCTTACTTGCTTATTCCCCACTTGGTGGTGGATCATTGTCTGGCAAGTATTTAGATATTAATTCTGAAGCTGCAAAAAGAGGAAGGCTCAACCTCTTTCCTGGCTACATGGAAAGATATAACAGATCTATTGCCAAGGAAGCAACAATAGAATATACGAAGGTGGCCAAGAAACATGGGCTGACTCTAGTTCAGCTTGCCCTGGGATTTGCGCGAGACCGTCCATTTATGGCAAGTTCGATTGTTGGTGCAACTTCTGTCGACCAACTAAAAGAAGATATCGATGCCTTTGTGACAACAGAACGGCCTCTGCCAGCAGAAGTGATGGCGGATATAGAGAGTACTTTCAAGAGATACAAAGATCCAGCAATCCTTTGA 1257 43.44 MVSIATIPAFPCNNTRSFPRHFLTRRSFSRHILTRRSTPPSFSAGTWRSTAITSKLKEKTALEYRKLGDSDLNISEITLGTMTFGEQNTENEAHEILSYAFEHGINALDTAEAYPIPMKKETQGKTDLYIASWLKSQPRDKVILATKVCGYSERSSYLRDNAKVLRVDAANIRESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEFSYDPSKWRPSIPFVEQLKAFQELIDEGKVRYIGVSNETSYGVMEFVHAAKVEGLPKIVSIQNSYSLLVRCRFEIDLVEVCHPNNYNIGLLAYSPLGGGSLSGKYLDINSEAAKRGRLNLFPGYMERYNRSIAKEATIEYTKVAKKHGLTLVQLALGFARDRPFMASSIVGATSVDQLKEDIDAFVTTERPLPAEVMADIESTFKRYKDPAIL* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8179521 8185638 + Vvi5g715 Vvi5g715 786857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g715 418 PRINTS Aldo-keto reductase signature 178 196 IPR020471 GO:0016491
Vvi5g715 418 PRINTS Aldo-keto reductase signature 226 243 IPR020471 GO:0016491
Vvi5g715 418 PANTHER NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED 46 418 - -
Vvi5g715 418 SUPERFAMILY NAD(P)-linked oxidoreductase 62 412 IPR036812 -
Vvi5g715 418 Gene3D - 62 417 IPR036812 -
Vvi5g715 418 PANTHER - 46 418 - -
Vvi5g715 418 CDD AKR_Tas-like 74 406 - -
Vvi5g715 418 Pfam Aldo/keto reductase family 76 407 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g715 - - - vvi:100259668 832.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g715 . . . . . Bpe14g01257 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0324 . . . . . . . . Bda13g00060 . . Bma02g00780 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011274 1 1 0 1 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 1 2 2 31