Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g716 ATGGCAGATCCTGTTAGTTATGGGAATTCTGAGCGTGACATCGAGCAAGCACTTGTTACTTTGAAAAAAGGGACTCAGCTAATCAAGTACAGCCGGAAAGGGAAGCCCAAGTTTCGTCCATTCAGAATCTCTACAGATGAAACGACATTGATCTGGTATTCACATGGAGAAGAAAGAAATTTGAAACTATCTTCTGTATCACGGATTATCCCTGGACAGAGAACTGCTGTTTTTAGAAGATATTTGCGCCCTGAAAAAGATTATTTATCATTTTCACTTCTATACAATAACGGTGAAAGATCTCTTGATCTGGTTAGTGAAATGGGATTATTCACTGAAGTTTGGCTTGCGGGTCTCCAGGCATTAATTTCTACTGGACAACATCGTAATAGACGCACCAGAAGTGACATTCCCGATGTGAGAATTTCATTTCAACATCAATATATTTATGCTTATGTAAACATTTACTTACAGAAGAATGGTACCTTCATATGCTACATATATATTATGCTATTTCAGTTCCATGATGGTGGGGATTTCATTCAAAATGGCCGGCCATTTGGTGTAAATCTAGATTTTGCTTCAAGCATTGCACGTGGTAGGTCATCTGTTGATCTGAGTTCTCGTGACTCTTCTTTGAATTGGGCGAGCTCAGATGCGGGGTCAGAACGCACAAATATGCAACTAAGAACAAGTGGAGTGGATGGTTTCCGGATTAGTGTTTCGAGCACTCCTAGCTGCTCAAGTCAAGGTTCTGGACCAGATGACATAGAATCGTTGGGTGATGTTTATGTCTGGGGAGAGATTGCTTGTGGTGTTCGGCATGTTGCTCTTGTTACCAGGCAAGGAGAAGTTTTCACCTGGGGGGAGGAATCTGGTGGGAGACTTGGCCATGGAATAGATAACGACTTCAGTCGCCCTCATCTTGTTGAATTTCTAGCAGTAAATAATGTGGACTTTGTTGCATGTGGTGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTTACCTGGGGTGATGGTACTCATAATGCTGGACTTCTTGGTCATGGCACTGAGGTTAGCCACTGGATACCAAAAAGAGTTTCTGGTCCTTTAGAAGGACTTCAGGTTTTATCTGTTGCATGTGGCACATGGCACTCAGCACTGGCAACTTCCAATGGGAAACTCTTTACATTTGGTGATGGAACTTTTGGTGTTCTAGGCCATGGAGATCGAGAAAGTGTTCCATATCCAAGGGAGGTTCAAATATTAAGTGGACTAAAGACGATTAAGGTTGCATGTGGAGTATGGCATACAGCAGCTATCATAGAGGTTATGAGCCAGTCTGGTACAAATATTTCATCTAGAAAGTTGTTCACCTGGGGTGATGGTGATAAACACCGTTTAGGTCATGGAAGCAAGGAAACTTACCTGCTTCCGACTTGTGTCTCTGCACTTATTGACTATAATTTCCATCAGCTGGCATGTGGACATACTATGACTGTTGCCCTCACTACATCAGGACATGTGTTCACAATGGGTGGTACTGCATATGGTCAACTAGGAAATCCACTTTCTGATGGGAGATTACCTTGTTTGGTACAAGATAAATTGGTCGGTGAGTTTGTTGAAGAAATTTCATGTGGGGCCTATCATGTTGCTGTGCTGACATCAAGAAGTGAAGTATTCACTTGGGGAAGAGGTGCCAATGGAAGATTGGGACATGGGGACACAGAAGATAGGAGATCTCCAACATTTGTCGAAGCGCTAAAAGATAGGAATGTAAAAAGCATATCATGTGGTTCCAATTTCACTGCAAGTATTTGCATTCATAAGTGGGTCTCTGGAGCAGACCAATCAGTTTGCTCTGGTTGCAGGCAGGCATTTGGTTTTACCAGGAAGCGGCACAACTGCTACAACTGTGGGCTAGTGCATTGCCATGCTTGCAGTTCCAAAAAGGCATTAAAAGCTGCATTGGCTCCAACTCCAGGCAAACCGCATCGAGTATGTGACCCTTGCTATGCAAAACTCAAAGCAGCTGAGGCTGGAGATGCCTCTATTTTTAATAGGAAAAACACTGTCCCCCGCCGATCAATAGATGCAACAATCAGGTCAGATAGAGGAGAGGTAAGGTCTGCAAGGATTCTGATGTCTCCTGGACCAATCAATTATTTTGAATTTAAACCAGCAAGGCTTGGGCCAAGACCAGATCCTTCTCCCATGATCCAATCTTCCCAAGGTCCATCACTTCTTAAAGACATTGCATTTCCAAGTTCACTGAGTGCTCTTCAAAATGCTTTAAAGCCTGTTATTACAGCATCACCTCAGACTGCACCTCCACCTCCACCTCAGCCGGCATTCTCAAGACCTGTTTCACCATACTCTAGGAGACCAAGCCCTCCACGCTCTGCTGGTCCTGTATTTTCAAGGAGTGTAATTGATAGTCTCAAGAAGACAAATGAGCTACTAAATCAAGAAGTAACAAAGCTGCAAAACCAAGTTAGAAGTTTGAAGCAGAAGTCAGAAGGTCAAGATGCAGAGATTCAGAAATTACGTAAAAATGCCCAAGAAGCTGATTTGTTGGCTCTGGAAGAATCTTCTAAATGCACGGTAGCAAAGGAAGTTGTCAAGTCCATCACAACACAGGATTATCTTGAGAGTGCTCATGAATCCACAAATTTACTTAAAGAAATGGAAAAGCAGTTACCTCCTGAGGTCTATGACAGTGAAACCTTTAAATCTATGCAAACTCAAATTGAAGCTTTTCTAAATACCAGTGGAACTCAAGCAGCCGAATTTTCATCTTCTTTACCAGCAGACTTGGAATCTGACCAGAAAAATGCCCCTGTTACCAATCCCTTGGGTGTGGAGGATCATGTAAATGCTGCAGGGCTTACAGACCTAACACAGAATGGTGAAAGCTCTGTACAGGACAGCAAACCAGAAAGTACTGAACAATTTGAGCCTGGTGTTTATGTGACTTTCATTGCACTCAAAAATGGTACCAAGATCTTCAAGAGAGTTAGATTCAGCAAACGGAAGTTTGGCGGCCAACAGGCAGAAGAATGGTGGAAGGAAAACAAAGAAAGGCTTCTTAGGAAGTACACCCCACCAGCATCAAGCAGTGCTCCAACTGGGTCATCGGTTCCTCCAGCACCAACAGATGAAAGTAATGAGTTGGCACAATCTTCCCAAACTTAG 3189 42.99 MADPVSYGNSERDIEQALVTLKKGTQLIKYSRKGKPKFRPFRISTDETTLIWYSHGEERNLKLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLLYNNGERSLDLVSEMGLFTEVWLAGLQALISTGQHRNRRTRSDIPDVRISFQHQYIYAYVNIYLQKNGTFICYIYIMLFQFHDGGDFIQNGRPFGVNLDFASSIARGRSSVDLSSRDSSLNWASSDAGSERTNMQLRTSGVDGFRISVSSTPSCSSQGSGPDDIESLGDVYVWGEIACGVRHVALVTRQGEVFTWGEESGGRLGHGIDNDFSRPHLVEFLAVNNVDFVACGEYHTCAVSTSGDLFTWGDGTHNAGLLGHGTEVSHWIPKRVSGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDRESVPYPREVQILSGLKTIKVACGVWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCVSALIDYNFHQLACGHTMTVALTTSGHVFTMGGTAYGQLGNPLSDGRLPCLVQDKLVGEFVEEISCGAYHVAVLTSRSEVFTWGRGANGRLGHGDTEDRRSPTFVEALKDRNVKSISCGSNFTASICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDPCYAKLKAAEAGDASIFNRKNTVPRRSIDATIRSDRGEVRSARILMSPGPINYFEFKPARLGPRPDPSPMIQSSQGPSLLKDIAFPSSLSALQNALKPVITASPQTAPPPPPQPAFSRPVSPYSRRPSPPRSAGPVFSRSVIDSLKKTNELLNQEVTKLQNQVRSLKQKSEGQDAEIQKLRKNAQEADLLALEESSKCTVAKEVVKSITTQDYLESAHESTNLLKEMEKQLPPEVYDSETFKSMQTQIEAFLNTSGTQAAEFSSSLPADLESDQKNAPVTNPLGVEDHVNAAGLTDLTQNGESSVQDSKPESTEQFEPGVYVTFIALKNGTKIFKRVRFSKRKFGGQQAEEWWKENKERLLRKYTPPASSSAPTGSSVPPAPTDESNELAQSSQT* 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8186955 8196949 + Vvi5g716 Vvi5g716 786858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g716 1062 Gene3D - 223 345 IPR009091 -
Vvi5g716 1062 SUPERFAMILY RCC1/BLIP-II 260 609 IPR009091 -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 175 269 - -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 146 - -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 269 1031 - -
Vvi5g716 1062 SUPERFAMILY FYVE/PHD zinc finger 608 675 IPR011011 -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Vvi5g716 1062 ProSiteProfiles BRX domain profile. 977 1032 IPR013591 -
Vvi5g716 1062 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 770 796 - -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Vvi5g716 1062 Coils Coil 809 850 - -
Vvi5g716 1062 CDD PH_PLC_plant-like 12 124 - -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Vvi5g716 1062 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Vvi5g716 1062 SMART fyve_4 606 675 IPR000306 GO:0046872
Vvi5g716 1062 CDD FYVE_like_SF 618 670 - -
Vvi5g716 1062 Gene3D - 13 133 IPR011993 -
Vvi5g716 1062 Gene3D - 346 604 IPR009091 -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 175 269 - -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 269 1031 - -
Vvi5g716 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 146 - -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 929 950 - -
Vvi5g716 1062 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 1034 1062 - -
Vvi5g716 1062 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Vvi5g716 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 768 805 - -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 929 946 - -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 334 385 IPR000408 -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Vvi5g716 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 557 603 IPR000408 -
Vvi5g716 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Vvi5g716 1062 SUPERFAMILY PH domain-like 13 123 - -
Vvi5g716 1062 MobiDBLite consensus disorder prediction 1030 1062 - -
Vvi5g716 1062 Pfam Transcription factor regulating root and shoot growth via Pin3 977 1031 IPR013591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g716 - - - vvi:100254552 1889.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005381 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 40