Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g720 ATGATCAGGGCTTCCTACAAGCATTCAATATGTTACTACAAAGTTGTCAATTCCACCACTAAAAATACTAGCTGCCCAATGTTGACAACTTCCTATTGGACAATGTTGCGTCTCATCAGAACGATTCATTCTTCCTTGTTCACAAATTCTTCGAATCCGTTAGAGCACACGCCATCGTCCTCAGAAGTTTTTGGTACAATCACGGTTCAATCGAACTTTGGAATTTTAATTGTGTTGCCAGTTTTGATCGTCCTGATGCGGCGGATCATGAAGAGGATGCCACAGAATCTTGATATAGGAGCAGAGATTAATGCTATCATGAGAGGCCGGTTACCGCAAAGGGAGATGGGGCCTCAGGAGGCAAGAAGAACAGAATCTGCAGGACGTGTGGACGGATCAGGAACAGTGGAGATATGCATCCAAGACATGCTGAAAGAAAAACCCGTCCGCTTTTCTCCTCAACAACTTGCAGCTTTTACCCAGAATTTTTCTACCAAACTTGGTTCAGGCGGCTTTGGACACGTCTACAGAGGAGTCCTTCCTGATGGGGTACAGATAGCCGTAAAAGTACTCAAACACAACAGAGGCCAAGACAAAAGAATGGAAGAGCAGTTCATGGCTGAAGTGAGTACCATCGGAAGAACTTACCACAGAAACCTGGTCAGGCTCTATGGTTTCTGCTTTGATTCTCAGCTCAAAGCGCTAGTCTATGAGTACATGGAAAATGGATCACTTGACACTGTCTTGTTTGGCAGGGAGCATAGAATCGAGTGGGAAAAGTTGTACGAAATTGCGGTTGGCGCAGCCAAGGGGCTTAAGTACTTGCACGATGATTGCCACAAAAGGATCATTCACCATGATATAAAGCCCGGAAATGTTCTGCTTGATTCCGATTTCTGTCCCAAGCTTGCAGATTTTGGACTAGCCAAGCTCTCCAATATGGACAGCACACATGAAAACTTCTCGGGTGGGGGCACTCCAGGATATGCTGCCCCAGAGGTTTGGATGCCATTTCAAGTGACTTACAAGTGCGATGTTTATAGCTTTGGGATGATGCTATTCGAGATTGTTGGACGAAGAAGGAACTTTTACAACTTCCCCGGTGAGGACCAAGACTGGTTTCCAAGACGGGTCTGGGACAAATTTGACGAGGGAGAATTGGAGGGGCTTCTGTTGGAGAGGGGGATCAAGGAGAAGGCGATGGTGAAAGCCAAGAAAATGTGCATGGTAGCTTTGTGGTGTGTCCAATACCTCCCTCAGGACAGACCTTCCATGGATCAAGTGTTGAAGATTTTAGAGGGCGGAGACCAAATTACAACGCCTAAAAACCCATTTCAGCATTTGGCATTATCATCTGATATGCCACCTATCAGCATTGAGAGCAGCACAAACTTTAGGAGTGATGAAACCACTGACAATAGTAGCGCTTGGCTCATGAACAAGTACGAAAGGGAAGGAGGCATCTTCATCTGGATGAACTAA 1482 45.75 MIRASYKHSICYYKVVNSTTKNTSCPMLTTSYWTMLRLIRTIHSSLFTNSSNPLEHTPSSSEVFGTITVQSNFGILIVLPVLIVLMRRIMKRMPQNLDIGAEINAIMRGRLPQREMGPQEARRTESAGRVDGSGTVEICIQDMLKEKPVRFSPQQLAAFTQNFSTKLGSGGFGHVYRGVLPDGVQIAVKVLKHNRGQDKRMEEQFMAEVSTIGRTYHRNLVRLYGFCFDSQLKALVYEYMENGSLDTVLFGREHRIEWEKLYEIAVGAAKGLKYLHDDCHKRIIHHDIKPGNVLLDSDFCPKLADFGLAKLSNMDSTHENFSGGGTPGYAAPEVWMPFQVTYKCDVYSFGMMLFEIVGRRRNFYNFPGEDQDWFPRRVWDKFDEGELEGLLLERGIKEKAMVKAKKMCMVALWCVQYLPQDRPSMDQVLKILEGGDQITTPKNPFQHLALSSDMPPISIESSTNFRSDETTDNSSAWLMNKYEREGGIFIWMN* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8298353 8300328 - Vvi5g720 Vvi5g720 786862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g720 493 SUPERFAMILY Protein kinase-like (PK-like) 143 432 IPR011009 -
Vvi5g720 493 PANTHER RUST RESISTANCE KINASE LR10-RELATED 102 492 IPR045874 GO:0004672
Vvi5g720 493 Gene3D Phosphorylase Kinase; domain 1 138 239 - -
Vvi5g720 493 ProSiteProfiles Protein kinase domain profile. 161 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g720 493 SMART serkin_6 161 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g720 493 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Vvi5g720 493 Pfam Protein tyrosine and serine/threonine kinase 163 431 IPR001245 GO:0004672|GO:0006468
Vvi5g720 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Vvi5g720 493 Gene3D Transferase(Phosphotransferase) domain 1 240 446 - -
Vvi5g720 493 PANTHER RECEPTOR SERINE/THREONINE KINASE 102 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g720 - - - vvi:100258020 826.239
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76676 PF07714 PK_Tyr_Ser-Thr 2.00E-45 CL0016 Vvi PK