Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g721 ATGTACACGAAATGGCTGATAATGAAAGTGGAGGAGCCAAGGATAGATCCTGAGGACCGAGGAGCAGAGAAGGCTGCTGCCTTAGGAAGAATGATAAGGGAATTGGTGGCTTCTGAGGCAAGAAAGAAGGCGGCAGCAGCAGAAGTTGAGGAGGAAACAGATGATGACGAGGAGAGAATGAAAGTGGAGATGGCCATAGAAAACATGCAAAAAGAAAAGCCCGTCCGCTTTTCTTCCAAACAACTTGCAGCTTACACTCGGAATTACTCTACCAAACTTGGTTCGGGTGGCTTTGGAGAAGTCTACAAAGCAGAGTTTCCTAATGGAGCGCATATGGCTGTAAAGGTACTAAACCACAATACCAGCATAAGCAAAAGAGTGGAAGAGCAATTCATGACTGAAGTGAGCACCCTTGGTAGAACCTACCATCGGAACCTGGTCAGGCTCTATGGATTCTGCCATGATGCAAAGGCCAAAGCACTGGTCTACGAGTACATGGGGATTGCAGTTGGGGCAGCCAAGGGGCTCGAGTATCTGCATCATTACTGTCGCCAGAGGATAATCCACTACGATATAAAGCCTGGTAATGTTCTTCTGGATTCTAATTTTTGTCCCAAGCTTGCGGATTTTGGATTAGCTAAGCTGTATGATATAGACATCACACATGTCAACTTTAGATATTTAATATTTTATATTCGTTAA 702 44.73 MYTKWLIMKVEEPRIDPEDRGAEKAAALGRMIRELVASEARKKAAAAEVEEETDDDEERMKVEMAIENMQKEKPVRFSSKQLAAYTRNYSTKLGSGGFGEVYKAEFPNGAHMAVKVLNHNTSISKRVEEQFMTEVSTLGRTYHRNLVRLYGFCHDAKAKALVYEYMGIAVGAAKGLEYLHHYCRQRIIHYDIKPGNVLLDSNFCPKLADFGLAKLYDIDITHVNFRYLIFYIR* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8304071 8304834 - Vvi5g721 Vvi5g721 786863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g721 233 PANTHER RECEPTOR SERINE/THREONINE KINASE 17 224 - -
Vvi5g721 233 Pfam Protein kinase domain 172 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g721 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vvi5g721 233 SUPERFAMILY Protein kinase-like (PK-like) 70 223 IPR011009 -
Vvi5g721 233 SMART serkin_6 87 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g721 233 ProSiteProfiles Protein kinase domain profile. 87 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g721 233 Gene3D Phosphorylase Kinase; domain 1 45 163 - -
Vvi5g721 233 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Vvi5g721 233 Gene3D Transferase(Phosphotransferase) domain 1 164 228 - -
Vvi5g721 233 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 224 IPR045874 GO:0004672
Vvi5g721 233 Pfam Protein tyrosine and serine/threonine kinase 90 167 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g721 - - - vvi:109122561 306.219
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76677 PF07714 PK_Tyr_Ser-Thr 4.60E-13 CL0016 Vvi PK