Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g722 ATGAAGTCAATAGGATGTTGGTTCAATAAGCTTAAATCAAGAGATAAGGCCAAGTCTTCAAAGAAAGAAGCTACTAATAATGGAAAAGAAGGGTCAAAAGCAGTGACAAGTGAGGAAGCGCCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCAAAGCAGTATATAGAAAACCATTATAAGGAGCAGATGAAGAATCTTCAGGAGAGGAAGGAGCGACGTAATATACTAGAGAAGAAATTAGCTGATGCTGAAGTCTCTGAGGAAGAGCAAAATAACCTACTGAAGCATTTGGAGAAGAAGGAAACAGAATATATGCGCCTCCAGAGGCATAAAATGGGTGCGGATGATTTTGAGCCATTGACAATGATAGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGCAGGGAGAAGAAAACCGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGGGGCCAGGTTGAACATGTGAAGGCTGAGAGGAATTTACTTGCAGAGGTTGATAGCAATTGCATTGTCAAACTTTATTGTTCATTCCAAGATGAAGAGTTTCTTTATCTTGTAATGGAATATCTACCTGGTGGAGATATGATGACTTTACTGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGAGATATCAAGCCCGACAATTTACTGCTCGATAGATATGGACATATGAAATTGTCAGATTTTGGATTATGTAAACCATTGGATTGCAGTAATCTTCATGAGAAGGACTTTTCTCTAGGAAACAACCTAAGCGGGGCCCTTCAAAGTGATGGGCGCCCTGCAGCACCGAGACGCACACAGCAGGAGCAATTGCAGCATTGGCAGAGGAACAGGAGAATGCTTGCCTATTCTACTGTTGGTACCCCTGACTACATTGCTCCAGAAGTGCTGCTTAAGAAAGGATATGGGATGGAGTGTGATTGGTGGTCTCTTGGTGCTATCATGTACGAAATGCTTGTGGGATATCCACCTTTTTATTCAGATGAACCTATGACAACTTGTAGGAAGATAGTAAACTGGAGAACTCATCTAAAATTTCCAGAAGAAGCAAAGTTATCTCCAGAAGCAAAGGACCTTATTAGTAAGCTCTTATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAGGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTGAGAAGTTTGAAGAGGCTGATGACCAAATTCAGACTTCGTCAAAAGCAGGTCCATGGAGGAAGATGCTTTCATCTAAAGACATCAACTTTGTAGGCTACACGTATAAGAACTTTGAAATTGTAAATGATCAGCCAGTACCTGGGATAGCTGAATTGAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCAACCTCTTACCCCCCAAACTAGAAGTGTCCCAAAAACATGGTGATCCCCATAGACCCCATTAA 1653 41.92 MKSIGCWFNKLKSRDKAKSSKKEATNNGKEGSKAVTSEEAPSNVTKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADAEVSEEEQNNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKKTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLVMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLDCSNLHEKDFSLGNNLSGALQSDGRPAAPRRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVDQRLGTKGADEIKAHPWFEGVDWDKLYQIEAAFIPEVNDELDTQNFEKFEEADDQIQTSSKAGPWRKMLSSKDINFVGYTYKNFEIVNDQPVPGIAELKKKSTKTKRPSIKSLFDDESGAAANEPVQGSFLNLLPPKLEVSQKHGDPHRPH* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8339149 8359048 + Vvi5g722 Vvi5g722 786864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g722 550 MobiDBLite consensus disorder prediction 503 527 - -
Vvi5g722 550 Coils Coil 60 104 - -
Vvi5g722 550 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g722 550 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi5g722 550 Gene3D Transferase(Phosphotransferase) domain 1 204 434 - -
Vvi5g722 550 SUPERFAMILY Protein kinase-like (PK-like) 93 467 IPR011009 -
Vvi5g722 550 MobiDBLite consensus disorder prediction 13 50 - -
Vvi5g722 550 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 39 520 - -
Vvi5g722 550 MobiDBLite consensus disorder prediction 29 49 - -
Vvi5g722 550 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Vvi5g722 550 MobiDBLite consensus disorder prediction 13 28 - -
Vvi5g722 550 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Vvi5g722 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vvi5g722 550 CDD STKc_NDR_like 116 481 - -
Vvi5g722 550 ProSiteProfiles Protein kinase domain profile. 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g722 550 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi5g722 550 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi5g722 550 SMART serkin_6 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g722 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 520 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g722 Vvi7g582 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76678 PF00069 Pkinase 7.60E-65 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g722 K08790 - vvi:100252887 1126.69