Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g724 ATGGATCATGTGATTGGTGGGAAGTTTAAGCTCGGCCGCAAGATCGGGAGTGGATCGTTCGGAGAGCTTTACTTAGGGATTAATGTACAAACTGGAGAAGAAGTGGCTGTTAAGCTGGAACCTGTAAAGACAAAGCACCCTCAACTTCACTATGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACTGGCGTTCCCCATCTCAAATGGTTTGGAGTTGAGGGTGAATACAATGCCATGGTCATTGACCTTCTTGGACCAAGCCTTGAGGACTTGTTCAACTACTGCAATCGGAAATTTTCATTGAAAACAGTTTTAATGCTCGCAGATCAACTAATTAATAGAGTTGAATATATGCACTCAAGGGGTTTTCTTCACCGTGATATAAAGCCTGATAACTTTTTAATGGGTTTAGGACGAAAAGCAAATCAGGTTTACATCATTGATTATGGCCTTGCTAAGAAGTACCGAGATTTTCAGACACACAAGCACATACCTTACAGAGAAAACAAGAATCTCACTGGAACAGCTCGCTATGCAAGTGTTAACACACACCTCGGAGTTGAACAAAGCAGGAGAGATGATCTGGAATCTCTTGGTTATGTGCTAATGTATTTTTTGAGGGGAAGCCTTCCATGGCAGGGCTTGAAAGCCGGTACTAAAAAACAGAAATATGACAAGATCAGTGAAAAGAAGATGCTGACTCCCATAGAGGTACTTTGCAAATCATATCCATCAGAGTTCACATCATATTTCCATTACTGTCGATCATTGCGGTTTGATGACAAACCAGATTATTCATACCTGAAGAGGCTTTTCCGGGACCTATTTATTCGTGAAGGTTATCAGTTTGATTATGTATTTGACTGGACCGTACTCAAGTATCCGCAAATTGGATCCAGTTCTAGAGTGCGGCAGCCTAGTGGAAAACCAGCTTTAAATCCTGGACCATCTGCAGAAAGAATGGAGCGGCCATCAGTGGGACAAGAGATTCGAGATAGATTCTCAGGTGCAGTTGAAGCATTTTCTAGAAGGAACAACTCAGGTTCTGGTTATCATGGTGACCAGTCCAGGCACAGAGGTTCGGAGGATGTACCATCTTCAAAGGATGTGCAAACTGATTCTGAAAGACCCCGGAGCTCCTCTCGAAATGGCAGTACTTCAAAGAGGGCTGTTGTATCAAGCAGCCGCCCAAGCTCCTCTGGTGAACCTACTGAGACTCGTGCAAGCCGTCTGGTCTCAGGCAGTGGCCGCTTGTCTACGACTCAAAGGAGCCAACCTGGTTTTGAATCGAAATCATCATCTTTCACTCGTGCTTCTGCAGCAAGAGGTGGGCGTGAAGATCCTCTACGGAGCTTTGAGCTCCTAACGATTGGCTCTGGGAAGAAGAAATGA 1395 44.3 MDHVIGGKFKLGRKIGSGSFGELYLGINVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGEYNAMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDFQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSRVRQPSGKPALNPGPSAERMERPSVGQEIRDRFSGAVEAFSRRNNSGSGYHGDQSRHRGSEDVPSSKDVQTDSERPRSSSRNGSTSKRAVVSSSRPSSSGEPTETRASRLVSGSGRLSTTQRSQPGFESKSSSFTRASAARGGREDPLRSFELLTIGSGKKK* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8390855 8397659 + Vvi5g724 Vvi5g724 786866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g724 464 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g724 464 Gene3D Transferase(Phosphotransferase) domain 1 1 329 - -
Vvi5g724 464 MobiDBLite consensus disorder prediction 356 377 - -
Vvi5g724 464 PANTHER CASEIN KINASE-RELATED 1 451 - -
Vvi5g724 464 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vvi5g724 464 MobiDBLite consensus disorder prediction 301 328 - -
Vvi5g724 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi5g724 464 MobiDBLite consensus disorder prediction 378 440 - -
Vvi5g724 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g724 464 SMART serkin_6 9 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g724 464 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 451 - -
Vvi5g724 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi5g724 464 MobiDBLite consensus disorder prediction 342 464 - -
Vvi5g724 464 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g724 K08960 CSNK1E; casein kinase 1, epsilon [EC:2.7.11.1] - vvi:100242639 929.858
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g724 Vvi7g583 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76679 PF00069 Pkinase 8.70E-26 CL0016 Vvi PK