Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g725 ATGGGAACCTTGTTCATAAACCAGATTAAAAGGCAGGCGGCATCTTTTATTCAAGAGAAATACAGAACTGCTAGGCTGGCTTTAACAGATACTACTCCAGCAGAATTGTTGGCTGAGGAAGCCACAAACTGTGATCCAATTGGGCCTGATGCCAAAACAATGACTATAATAGCTGAGGCATCCTTTGACATAGATGATTATTGGAGAATTGTGGATGTTCTTCATAAGAGTAAATGCAGGTTGTTTACAATTGATTGGAAGCAATGGAGGCAATCCTACAAAACACTGGTGCTGCTTGATTTCTTATTAACTCATGGCCCTGAAGACTTTGCAGGAGCATTCCAATGTGATAGTGATGTTATCGAAGAGCTTGGAACATTTAGATATGTTGATGAAAAAGGGTTTGATTGGGGAATACTGATGCAAAAGAAATCAGAAAAGATAATAGATCTCCTCAGGGGAGGGGAAACACTCAAAGAAGCACGTTTCAAAGCTCTCAAAATAACAAAAGAAATCCAAGGGTTTGGGAATTACATGGCATCACCTTCATCCTCTTCATCTTCTGGGTCGTCAAGAACTTCTTCTTTTGGATCATATTCTACCTCGACGCACCTTTGGGATTGCACTTCAATTCAAGAAACAGGCTCTTTACTTGATTCTGAAGGCGAGGAGGATGCAAAAAAAGATGGTTTTATAAGTGGAATTTGCTCCAAGCTTGTGGGTATCAGTCCTACAAGAACTAACAGTGAGAAAGCCACTTTGAGGAATTATTCAGATGTTGGAAGGGTAACAAAGAAAAAGTTCCATCGCCAGTTTTCTGTACAGTAG 828 40.1 MGTLFINQIKRQAASFIQEKYRTARLALTDTTPAELLAEEATNCDPIGPDAKTMTIIAEASFDIDDYWRIVDVLHKSKCRLFTIDWKQWRQSYKTLVLLDFLLTHGPEDFAGAFQCDSDVIEELGTFRYVDEKGFDWGILMQKKSEKIIDLLRGGETLKEARFKALKITKEIQGFGNYMASPSSSSSSGSSRTSSFGSYSTSTHLWDCTSIQETGSLLDSEGEEDAKKDGFISGICSKLVGISPTRTNSEKATLRNYSDVGRVTKKKFHRQFSVQ* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8485997 8487467 + Vvi5g725 Vvi5g725 786867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g725 275 CDD ENTH 34 153 - -
Vvi5g725 275 Pfam ENTH domain 32 157 IPR013809 -
Vvi5g725 275 SMART enth_2 32 162 IPR013809 -
Vvi5g725 275 PANTHER ENTH/VHS FAMILY PROTEIN 202 274 - -
Vvi5g725 275 PANTHER ENTH/VHS FAMILY PROTEIN 3 203 - -
Vvi5g725 275 SUPERFAMILY ENTH/VHS domain 12 162 IPR008942 -
Vvi5g725 275 PANTHER EPSIN/ENT-RELATED 202 274 - -
Vvi5g725 275 PANTHER EPSIN/ENT-RELATED 3 203 - -
Vvi5g725 275 Gene3D - 28 178 IPR008942 -
Vvi5g725 275 ProSiteProfiles ENTH domain profile. 26 162 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g725 K12471 EPN; epsin - vvi:100261310 484.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g725 . . . . . . . . . . . Cma14g01819 . Car14g01630 . . Cpe03g01521 Bhi01g00719 . . . Hepe05g1664 . . . . . . . . . Cone14ag0155 . . . Lsi05g01740 . . Cme06g00481 . . . . . . . . . . Cmo14g01857 . . . . . . . . . . . . . Cla05g00437 Cam05g0476 Cec05g0485 Cco05g0485 Clacu05g0473 Cmu05g0451 Cre05g0513 . Csa03g01199 Chy06g00463 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012486 0 2 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29