Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g726 ATGAGTGAGCGGCAAAGGCTCGCGAAGCTGTTGAGGAACTGTTCCAAGAATGGGTTATTTGATCAAGGATTGCAAGTTCATGCAGCTGCGGTGAATATGGGATTTGGGTTTGATTTGATAATGAACAATGATCTCATAGATATGTACGGAAAATGTAGCAGGGTTGACTTGGCCTGCTCTGTGTTTGATAGAATGCTTGAGAGAAATGTGGTGTCTTGGACTGCTCTCATGTGTGGTTATTTACAGGAGGGTAATGCCAAAGGATCATTGGCTCTCTTGTGCGAAATGGGATATTCGGGTGTTAAGCCAAATGAATTCACTTTCTCCACCAGTCTTAAAGCTTGTGGAGCTTTGGGTGTCGTGGAGAATGGAATGCAGATTCATGGAATGTGTGTTAAAAGTGGGTTTGAATGGGTTTCTGTGGTGGGCAATGCTACCATTGACATGTACTCAAAATGTGGGAGAATTGGTATGGCGGAGCAGGTGTTCAATAAGATGCCTTTTAGGAATCTTGTAAGTTGGAATGCAATGATTGCGGGACATACCCATGAAGGAAATGGCAGGAAATCTCTAGTTTTATTCCAGAGAATGCAAGGACAGGGGGAAGTCCCAGATGAATTCACATTTACAAGCACTTTAAAGGCTTGTGGTGCTCTTGGAGCAATCCGCGGAGGAACCCAAATTCATGCTTCCTTAATAACAAGGGGCTTTCCAATTTCCATTCGTAATATTATTGCAAGTGCAATTGTTGATTTGTATGCAAAATGTGGGTACTTATTTGAAGCACAAAAAGTATTTGATCGAATTGAACAGAAGAATTTGATATCATGGTCTGCTCTAATTCAAGGTTTTGCTCAAGAGGGAAACCTACTAGAGGCCATGGACTTGTTTAGACAACTAAGGGAGAGTGTCTCTAACGTCGATGGATTTGTTCTCTCAATCATGATGGGTGTCTTTGCTGATCTTGCTCTGGTAGAGCAAGGGAAGCAAATGCATTGCTACATCCTTAAAGTGCCATCTGGTTTGGACATTTCAGTAGCTAATTCAATCATTGATATGTACCTCAAGTGTGGGTTAACAGAAGAAGCAGAAAGGCTTTTCAGTGAAATGCAGGTGAGAAATGTAGTTTCTTGGACAGTTATGATCACTGGGTATGGAAAGCATGGTCTTGGAGAAAAAGCCATTCATCTCTTCAACAGAATGCAGTTAGATGGCATTGAACTGGATGAGGTGGCTTACTTGGCACTGCTCTCAGCCTGTAGCCATTCAGGACTAATAAGAGAAAGTCAAGAATACTTCTCAAGATTGTGTAACAACCATCAAATGAAACCTAACATTGAGCATTATGCTTGCATGGTTGATATCCTTGGCCGTGCTGGTCAACTAAAAGAAGCAAAGAATCTAATAGAGAACATGAAGCTAAAACCAAATGAAGGTATATGGCAGACATTGCTCAGTGCTTGTAGAGTACATGGCAACTTGGAAATAGGGAGAGAAGTAGGAGAGATTCTATTTAGGATGGACACTGATAATCCGGTCAATTATGTAATGATGTCCAATATTTATGCTGAGGCCGGCTACTGGAAAGAGTGTGAAAGAGTGAGAAAATTGGTTAAGGCAAAAGGGTTGAAGAAAGAAGCAGGACAGAGTTGGGTTGAGATTAACAAGGAGATCCATTTTTTCTATGGTGGAGATGACACGCACCCATTAACAGAGAAAATTCATGAGATGTTAAAGGAAATGGAAAGAAGGGTGAAAGAAGAGGTGGGTTATGCTTATGGGTTGAGGTTTGCATTGCATGATGTGGAGGAGGAGTCAAAGGAGGAAAACTTGAGAGTTCACAGTGAGAAGTTGGCAATTGGATTGGCATTGGTTTGCGATGGTATGGAAAAGAAGGGAGGAGTTATTCGCGTTTTCAAGAACTTGAGAGTTTGTGGGGATTGTCATGAGTTCATCAAGGGTTTATCAAAAATTTTGAAGAAGGTGTTTGTGGTGAGAGATGCTAATAGATTTCACAGGTTTGAGGATGGATTATGTTCCTGTGGAGATTATTGGTGA 2058 41.35 MSERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8499366 8501424 + Vvi5g726 Vvi5g726 786868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g726 685 PANTHER - 1 651 - -
Vvi5g726 685 Gene3D Tetratricopeptide repeat domain 242 333 IPR011990 GO:0005515
Vvi5g726 685 Gene3D Tetratricopeptide repeat domain 334 426 IPR011990 GO:0005515
Vvi5g726 685 Gene3D Tetratricopeptide repeat domain 2 121 IPR011990 GO:0005515
Vvi5g726 685 Pfam DYW family of nucleic acid deaminases 590 685 IPR032867 GO:0008270
Vvi5g726 685 Pfam PPR repeat 247 273 IPR002885 -
Vvi5g726 685 Pfam PPR repeat 275 302 IPR002885 -
Vvi5g726 685 Pfam PPR repeat 449 473 IPR002885 -
Vvi5g726 685 Pfam PPR repeat 144 168 IPR002885 -
Vvi5g726 685 Gene3D Tetratricopeptide repeat domain 122 241 IPR011990 GO:0005515
Vvi5g726 685 Gene3D Tetratricopeptide repeat domain 427 637 IPR011990 GO:0005515
Vvi5g726 685 Pfam E motif 491 553 IPR046848 -
Vvi5g726 685 Pfam PPR repeat family 68 115 IPR002885 -
Vvi5g726 685 Pfam PPR repeat family 373 421 IPR002885 -
Vvi5g726 685 Pfam PPR repeat family 170 216 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 348 376 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 275 303 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Vvi5g726 685 TIGRFAM PPR: pentatricopeptide repeat domain 43 71 IPR002885 -
Vvi5g726 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vvi5g726 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 373 IPR002885 -
Vvi5g726 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Vvi5g726 685 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 651 - -
Vvi5g726 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Vvi5g726 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g726 - - - vvi:100256217 1388.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g726 . Blo12g00160 . . Bpe04g01006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003014 2 2 0 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 1 0 1 1 0 0 0 1 1 1 0 3 29