Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g733 ATGTCAACAAAGGTGAAGGGCCTCTTGAAGGGCCTAAGATACATTTCACAAATATTTGAAAATGAAAAAGAACCCGAGATGCAGATTGGCTTTCCCACGGACGTGAAGCATGTTGCACACATAGGATGGGATGGCCCGTCTGTAAGTTCGCCGAGTTGGATGAATGAGTTCAAATCCACTCCTGAAACCTTATCCGCCCCATTAACATCTAACGGAGTTGCAAAGGAAATTTCTGTAGATGAAGGTTAA 249 43.78 MSTKVKGLLKGLRYISQIFENEKEPEMQIGFPTDVKHVAHIGWDGPSVSSPSWMNEFKSTPETLSAPLTSNGVAKEISVDEG* 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8606636 8607245 + Vvi5g733 Vvi5g733 786875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g733 82 Gene3D CRIB domain 23 76 IPR036936 -
Vvi5g733 82 ProSiteProfiles CRIB domain profile. 29 42 IPR000095 -
Vvi5g733 82 SMART PBD_5 29 60 IPR000095 -
Vvi5g733 82 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 76 - -
Vvi5g733 82 CDD CRIB 27 59 - -
Vvi5g733 82 Pfam P21-Rho-binding domain 28 60 IPR000095 -
Vvi5g733 82 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 76 IPR044510 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g733 - - - vri:117915129 167.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88