Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g735 ATGGCTCCAACACCCTCTTCCAAGTCAAACCACGCCCAAGTGACCCAGATGAAAACGCCAAATTCGAAGCATCGGCTTCATTTCAATGGGGGAAAAGTCACACAGCCATCTCCAAACCCACATTCAGTAGCCAAAGAGACCCCTCCGGCAGAGCACCCGGTTGAAGTCATTGGCCGAATCCGTGATTACCCGGACCGGAAAGACAAACCCTTGTCGATTTTGCACATCAATCCCGATCGGCAGACTGTCCGGGTTCGCACAGATATTGGGTACCGCGACTTCAGCCTTGATGGGGTTTCATTGTCAGAGGAAGAAGATATCGATGGATTCTACAAAAAGTTTGTGGAGTCCAGGATTAATGGTGTGAAAATGGGTGAAAAATGCACTATCATGATGTATGGACCAACTGGTTCGGGGAAGAGCCATACTATGTTTGGGTGTTCTAAGCAGCCGGGTATTGTGTACAGATCTTTGAAAGATATTTTGGGGGGAGCAGATGAAGAAAATGATGGCAACGAGCAGCGCGTCGGTGTTGGAACTTTTGTTCAAGTCACTGTTTTGGAGATATATAATGAAGAGATTTATGATCTTCTGTCAAGCAATACCGGTGGAGGGTTGAATCTTGGGTGGGCTAAGGGCGGTTCTTCAAAGGTGAGACTAGAAGTAATGGGAAAGAAGGCCAAGAATGCAACCTTTATATCTGGAACTGAAGCCGGAAAGATATCTAAAGAGATCCAAAAAGTGGAGAAGCGAAGAATTGTTAAAAGCACACTCTGTAATGACAGAAGCTCCAGAAGCCACTGCATGATAATCCTTGATGTCCCTACTGTGGGAGGAAGGTTGATGCTTGTTGACATGGCTGGTTCTGAAAATATTGAGCAAGCTGGTCAAACTGGATTGGAAGCAAAAATGCAGACAGGAAAGATCAACCAGGGAAATATAGCATTGAAAAGAGTAGTCGAGTCCATAGCAAATGGTGATTCTCATGTGCCGTTCAGAGATAGCAAGTTAACCATGCTTCTACAGGATTCGTTCGAAGATGATAAATCAAAAATTTTAATGATATTATGTGCAAGCCCTGATCCCAAGGAGATACACAAGACAATCTCCACCCTTGAGTATGGTGCAAAAGCAAAATGTATTGTTCGTGGTCCTCATACACCAGTGAATGATAAAGTCGGTACTGAAGATTCTTCATCAGGAGTTATTTTAGGATCAAGAATCGCTGCCATGGACCAGTTCATTTATAAGTTGCAAATGGAGAACAAGCTACGGGAGAAGGAGCGGAATGAAGCCCATAAAGCGCTTCTGAAGAAAGAAGAAGAAGTTGCAGCATTGAGAGCTAAAATTGAGCTCATGGAAGGGAAGGAATCAGGGATAAGTGAAGAGGTGATCAACTTCAAGGTGAATGAGCGCACCCAATTTTTGAAGCATGAGTTGGAAAAGAAGCTGCAAGAGTGCCAGAGTATGGCGAATGAGTTTATTGAATCTGAGCTGTTCTTTTCAAGGAGCATAAATGGTAAGGTAAATGTGTCAAGGGACCTAGAAGGGAACGGCTTTGCCAAAAGGCTAGTTGAGATTTATGCTGATGAGGACCCTGGGATGGTGAAGTCTATGGATCTGGACATGGGTGATCAGGAACCATATGTTCGTGATGTGAGACATATAGATAGGGGTGTTCATCAGCTCAATAATAATTATGGTGACAGAGTATGCTTGAGCACTACCGTGTGCTCTGGCGGGATGGATGGCTCTGATGCAGCCTCTTCAAGACGGAAAAGAATTCAAAATATATTCACACTCTGTGGGAATCAGAGAGAGATTTCTCACCATACAAAGGTGGCCCCTGGAAGGTGTGAAACTTTTGATCCTCAGAATATCATTTGCAACGGTTAA 1896 44.15 MAPTPSSKSNHAQVTQMKTPNSKHRLHFNGGKVTQPSPNPHSVAKETPPAEHPVEVIGRIRDYPDRKDKPLSILHINPDRQTVRVRTDIGYRDFSLDGVSLSEEEDIDGFYKKFVESRINGVKMGEKCTIMMYGPTGSGKSHTMFGCSKQPGIVYRSLKDILGGADEENDGNEQRVGVGTFVQVTVLEIYNEEIYDLLSSNTGGGLNLGWAKGGSSKVRLEVMGKKAKNATFISGTEAGKISKEIQKVEKRRIVKSTLCNDRSSRSHCMIILDVPTVGGRLMLVDMAGSENIEQAGQTGLEAKMQTGKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTISTLEYGAKAKCIVRGPHTPVNDKVGTEDSSSGVILGSRIAAMDQFIYKLQMENKLREKERNEAHKALLKKEEEVAALRAKIELMEGKESGISEEVINFKVNERTQFLKHELEKKLQECQSMANEFIESELFFSRSINGKVNVSRDLEGNGFAKRLVEIYADEDPGMVKSMDLDMGDQEPYVRDVRHIDRGVHQLNNNYGDRVCLSTTVCSGGMDGSDAASSRRKRIQNIFTLCGNQREISHHTKVAPGRCETFDPQNIICNG* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8611048 8614480 - Vvi5g735 Vvi5g735 786877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g735 631 PANTHER KINESIN-RELATED 509 543 IPR027640 GO:0003777|GO:0007018
Vvi5g735 631 PANTHER KINESIN-RELATED 585 615 IPR027640 GO:0003777|GO:0007018
Vvi5g735 631 PANTHER KINESIN-RELATED 19 498 IPR027640 GO:0003777|GO:0007018
Vvi5g735 631 MobiDBLite consensus disorder prediction 1 52 - -
Vvi5g735 631 Gene3D Kinesin motor domain 32 384 IPR036961 -
Vvi5g735 631 Coils Coil 420 456 - -
Vvi5g735 631 PRINTS Kinesin heavy chain signature 125 146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 PRINTS Kinesin heavy chain signature 257 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 PRINTS Kinesin heavy chain signature 280 298 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 PRINTS Kinesin heavy chain signature 330 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 SMART kinesin_4 51 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 Pfam Kinesin motor domain 87 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 MobiDBLite consensus disorder prediction 1 23 - -
Vvi5g735 631 Coils Coil 477 497 - -
Vvi5g735 631 ProSiteProfiles Kinesin motor domain profile. 53 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g735 631 PANTHER KINESIN-LIKE PROTEIN KIF22 585 615 - -
Vvi5g735 631 PANTHER KINESIN-LIKE PROTEIN KIF22 19 498 - -
Vvi5g735 631 PANTHER KINESIN-LIKE PROTEIN KIF22 509 543 - -
Vvi5g735 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 388 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g735 - - - vvi:100264847 1154.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39