Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g738 ATGGATATGAAGAAAAATATTACTGCTAAAGATGATTTGAAGTGGGAAAGAAAATTAGCAAAGAAACTTAGGGTTAAGGAAGGGAAACTATGGGGAGTGGATGATGGCATCAATTCTTTATTTGAAGAAATCCCATCTGTTGTCGATTCCCTAGGGGAGGGAGAAATCTTGGAGGCTCAAAAATTTTCTTTGGGAAGTTCAGTGAAGAAGAGGAAAAAATCGGGGCTAGTTGTGGAAACCAGTAGTGGAGATGTGGCATTGGAACACGTTTCTATCAAGATGTGTTCAAGTAAGAAACATGAGAAGGAGTTATTGGAGCAAGGGCCAGAAGGTGAGATGGCCCACATGGTGGCAATTAGGGTTGCAAAGCCTGTCAAAACATTTGGTCCAGAGGTCGTAATGGAAAAAGCACCTGCATTAGAGGAAAGTATAAAATACAAAGCTCCATACTTGAGATCTTGTGCAGGAAATGACTTAGAAGAGTATCATCAAATTCAGAGACAAATAAGAGGTCTTTTGAACAGGCTTTCTGAATCTAATTTGGAATCTATTACCAAGGAAATGGTCACAATCTTCCATTCTGTTGATCGCGGTGTTAGTTCTCAGATTATCACTGAGGAGGTTTTGGCATCATGTTTTGGAGGTCAACGTGGCAATGAACAGTATGCTGCAGTTTTTGCAGCTTTTGTTGCGGGCATGGCTTATCTTGTTGGGAATGACTTTAGTGCAGAGCTTGTGGCTTCTCTTGCTAAATCTTTTGAGGATGAGTGCTTGAGAAATGACGAACTTTCGTTGAGAAATCTGACTCTTCTACTTTCCTATTTATACATTTTTAATGTTTTCACAAGTGATTTAATATATGACTTGCTGATCATTTTGAGCAAACAATTGCTGGAGATCGATGTCTCTACCATCTTGACTATTCTACAATGTTCTGGTATGAAACTAAGGCATGATGATCCTGTTGCCATGAAAAATTTTATTCTGAGTGTTCAGAATAGGATGAATGAGCTGAAGGCCACCTCTGAAGATGGCAAGTCAAACATAAACAACAAAAGAATGGAGTTCATGCTCGAAACCATATGCAATATCAAGAACAACAAAAAGAGCCCTAAAGAGGACACTCTGCAATATGCACAGATAAACAAATGGTTACAGAAGCTAAGAGTAGAAGATATTGTAATTAGAGGGCTCAAATGGAGTAAGCTGCTTGATCCAGACAAAAGTGGCCACTGGTGGTTGTCCAGTAATATGGCTTTCCTAGCAGACAACAATGCTGAAGAAGTTGCCGCCAGAATTGAGGGGGACGTTCTTGAAGTCCAGAAAATGCTGCAGCTTGCTGCCACACTAGGGATGAACACAGATGCCAGAAGGGCAATCTTTTGTGTAATAATGACTTCAGTGGATGTCCTTGATGCATTTCAGAAACTTCTGAGGTTGGATTTGCCTGGGAAGCAGGATAGAGACATCATGCGAGTTATCCTCATATGCTGTTTACGGGAGGAACTATTTAACAAATATTACACCATTCTGGCATCACATTTGTGCAAACATGACAAAAACCAGAAGTATACTTTGCAGTGTTGCCTCTGGGACCATTTCAAAAGGCTGGAATCAATGGACCCGATGACATCTTTGCATCTGGCAAGATTTGTCGATGAGATGCTTGCTTCTTTCACACTCTCTCTGGCAGTTCTGAAGACCGTTGGACTGAGCGACTCCAAGCAGCTCACCCCAACAAGGATTATGCACTTCCGGATGATATTTGAGGCTATATTTCAGAATCCAGATAGGGTGGTGTGGAACATATTTAAGCGCATAGCTGCCACTCCTGATCTTGAAACCCTTCGCAATGGCATCAAGTTCTTCATCAGGGAGTATGTGGTGAGCAGGAATAAAGGCTTTGCTGGAAAATTCAAAGTTGCAAAGAGAGCCCTCAACAGTGTGGAAGTTCTTTTGTATTGA 1965 41.22 MDMKKNITAKDDLKWERKLAKKLRVKEGKLWGVDDGINSLFEEIPSVVDSLGEGEILEAQKFSLGSSVKKRKKSGLVVETSSGDVALEHVSIKMCSSKKHEKELLEQGPEGEMAHMVAIRVAKPVKTFGPEVVMEKAPALEESIKYKAPYLRSCAGNDLEEYHQIQRQIRGLLNRLSESNLESITKEMVTIFHSVDRGVSSQIITEEVLASCFGGQRGNEQYAAVFAAFVAGMAYLVGNDFSAELVASLAKSFEDECLRNDELSLRNLTLLLSYLYIFNVFTSDLIYDLLIILSKQLLEIDVSTILTILQCSGMKLRHDDPVAMKNFILSVQNRMNELKATSEDGKSNINNKRMEFMLETICNIKNNKKSPKEDTLQYAQINKWLQKLRVEDIVIRGLKWSKLLDPDKSGHWWLSSNMAFLADNNAEEVAARIEGDVLEVQKMLQLAATLGMNTDARRAIFCVIMTSVDVLDAFQKLLRLDLPGKQDRDIMRVILICCLREELFNKYYTILASHLCKHDKNQKYTLQCCLWDHFKRLESMDPMTSLHLARFVDEMLASFTLSLAVLKTVGLSDSKQLTPTRIMHFRMIFEAIFQNPDRVVWNIFKRIAATPDLETLRNGIKFFIREYVVSRNKGFAGKFKVAKRALNSVEVLLY* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8652755 8665137 + Vvi5g738 Vvi5g738 786880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g738 654 Coils Coil 162 182 - -
Vvi5g738 654 Pfam MA3 domain 457 558 IPR003891 -
Vvi5g738 654 SMART if4_15 166 368 IPR003890 GO:0003723|GO:0005515
Vvi5g738 654 SUPERFAMILY ARM repeat 159 368 IPR016024 -
Vvi5g738 654 ProSiteProfiles MI domain profile. 455 571 IPR003891 -
Vvi5g738 654 PANTHER CELL CYCLE CONTROL PROTEIN CWF22-RELATED 4 650 - -
Vvi5g738 654 SMART ma3_7 456 562 IPR003891 -
Vvi5g738 654 Pfam MIF4G domain 166 368 IPR003890 GO:0003723|GO:0005515
Vvi5g738 654 PANTHER NUCLEOLAR MIF4G DOMAIN-CONTAINING PROTEIN 1 4 650 - -
Vvi5g738 654 Gene3D - 135 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g738 K17583 NOM1; nucleolar MIF4G domain-containing protein 1 - vvi:100263192 1259.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g738 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .