Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g747 ATGAACAAGAGAGGATTCAGCATTAGAGGCAGGTTGAGGAAGATGATGAAGTGCATTTGTTCAGGGGAGCAGTTAAGAGTGGATGAAATAATTCCTTCGTCGGAGTCTCTGGCGACCCGGGACTATTCTGCAAGTGGATACTCTTCTCGAGCTGGTGACAATGAAAGGAAGCCCGATACAAGCAACATTGAGGAAGCAGAGTCATCTCTCCGGGAAAGTGGTTTTTTGAACTATGAGGAAGCAAGAGCTTTATTAGGAAGGCTTGAGTATCAAAAGGGAAATATAGAAGCGGCTCTTCATGTATTTGAAGGAATAGACATTGCCGCTGTAACTCCCAAGATGAAACTCTCCATTGCTAGAAGGTGCGAACTGCACAGACGCCGTTCACAAAGTGAGGCTATCCCACCTATGTCCATGCATGCTGTTAGTTTACTTATTGAAGCAATTTTCCTCAAGGCAAAATCACTGCAGGCTCTTGGGAGATTTGGAGAAGCTGCTCAATCATGCAAAGTTATTCTGGACACTGTTGAATCTGCATTACCTGAAGGCTTGCCTGAGAACTTTGCTGCTGATTGTAAATTGCTGGAGACTCTGAACAAGGCTGTTGAGTTGCTTCCTGAGCTTTGGAAACTTGCTGGTTCTCCCCAAGAAGCAATCCTGTCATATCGGCAGGCCCTCCTCCATAATTGGAATCTTGACATGGAAACCGCAACAAAGATAGAAAAGGAATTTGCAATATTTCTTCTGTATAGTGGTAGTGATGCAAGTCCTCCAAATCTTCGTTCCCAGATGGAAGGCTCCTTTGTACCAAGGAACAATATAGAAGAGGCTATTCTTCTGTTAATGATTCTGCTAAGAAAGTTTGTTCTCAAAAGAATTGCATGGGACCCATCAATCATCGATCACCTTTCATTTGCTTTGTCTGTTTCAGGTGAGTTAAGGACTCTTGCCCATCAGGTTGAACTCTTGCTTCCTGGAATCATGGAAAGAAAAGAAAGATTTAGCACTTTAGCTCTTTGCTACCATGGGGAAGGTGAGGATATGGTTGCTTTGAATCTGTTGAGGAACTTGTTGAATAACAGAGATAACCCAGACTGCACACTAGAATTATTGCTGGCTTCAAAAATTTGTGGGGAGAATGTTGATTGCACAGATGAAGGGACAGATTATGCTCACAAAGCACTTTCCAAGTTACAAGGAAGATGCAAACAGATGGCAAGTGTTGCCAATTGCTTACTCGGTGTTTCATTATCTGCTAAATCAAGATCTTCTCCCTCTGATTATGATAGGATTCTGAGACAGTATGAGGCACTTGAGGCACTAGAAACTGCTGAAAGAACAATGATAGATAGGGATCCGAATGTTTTATTCCATCTTAGTCTAGAAAATGCTGAACAGAGAAAGTTGGATGCTGCACTTCATTATGCAAGGCAGCTGTTGAAAATTGAGGCTGGGTCTAGTGTTAAAGGGTGGATCCTTTTGGCTAGAATATTGTCTGCTCAAAAACAGTTTGAAGATGCTGAGTGTGTAATTAATGCTGCTATGGATCAGACTGGGAAGTGGGATCAAGGAGAATTGTTGCGTACTAAAGCTAAACTCCAGATTGCACAGGGCCGTTTAAAGAATGCAATAGAGACCTATACTCATCTTCTTGCTGTTCTTCAAGTTCGGAATAAAAACTTTAGAGTTGGGAAGCAACTTCTGAAGAACAGGGCAAACCATCACAGAAGGTTGGAAATGGAAACATGGCATGATCTAGCTAATGTATACACAAGCTTGTCACAGTGGCGGGATGCTGAGGTCTGTCTTTCAAAATCAAAGGCTATTGGTTCTCATTCTGCATCTAGATGGCATTCAACAGGTTTACTGTATGAGGCTAAGGGACTTCACAAAGAGGCATTGAAATCATTCGGGAAAGCTTTGGATGTTGAACCATCCCATGTCCCAAGCTTGATCTCCACAGCAACTGTTCTGAGAAAGCTGAGCGACCAATCATTACCAGCTGTGAGAAGCTTTCTGACTGATGCTCTCCGTATCGACAGAACAAACCCTTCTGCATGGTACAATCTTGGGTTGGTATGCAAAGCTGAGATGGGTGCATCGGCAGTGGAAGCTACCGAATGTTTTGAGGCTGCAGCATTTCTTCAAGAAACTGCACCAGTTGAACCCTTTAGATGA 2178 42.98 MNKRGFSIRGRLRKMMKCICSGEQLRVDEIIPSSESLATRDYSASGYSSRAGDNERKPDTSNIEEAESSLRESGFLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVTPKMKLSIARRCELHRRRSQSEAIPPMSMHAVSLLIEAIFLKAKSLQALGRFGEAAQSCKVILDTVESALPEGLPENFAADCKLLETLNKAVELLPELWKLAGSPQEAILSYRQALLHNWNLDMETATKIEKEFAIFLLYSGSDASPPNLRSQMEGSFVPRNNIEEAILLLMILLRKFVLKRIAWDPSIIDHLSFALSVSGELRTLAHQVELLLPGIMERKERFSTLALCYHGEGEDMVALNLLRNLLNNRDNPDCTLELLLASKICGENVDCTDEGTDYAHKALSKLQGRCKQMASVANCLLGVSLSAKSRSSPSDYDRILRQYEALEALETAERTMIDRDPNVLFHLSLENAEQRKLDAALHYARQLLKIEAGSSVKGWILLARILSAQKQFEDAECVINAAMDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYTHLLAVLQVRNKNFRVGKQLLKNRANHHRRLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIGSHSASRWHSTGLLYEAKGLHKEALKSFGKALDVEPSHVPSLISTATVLRKLSDQSLPAVRSFLTDALRIDRTNPSAWYNLGLVCKAEMGASAVEATECFEAAAFLQETAPVEPFR* 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8773785 8779227 + Vvi5g747 Vvi5g747 786889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g747 725 MobiDBLite consensus disorder prediction 42 68 - -
Vvi5g747 725 PANTHER OS10G0471400 PROTEIN 8 725 - -
Vvi5g747 725 SUPERFAMILY TPR-like 525 694 IPR011990 GO:0005515
Vvi5g747 725 PANTHER PROTEIN NPG1 8 725 IPR043376 -
Vvi5g747 725 SMART tpr_5 524 557 IPR019734 GO:0005515
Vvi5g747 725 SMART tpr_5 453 486 IPR019734 GO:0005515
Vvi5g747 725 SMART tpr_5 614 647 IPR019734 GO:0005515
Vvi5g747 725 SMART tpr_5 146 179 IPR019734 GO:0005515
Vvi5g747 725 SMART tpr_5 580 613 IPR019734 GO:0005515
Vvi5g747 725 SMART tpr_5 488 521 IPR019734 GO:0005515
Vvi5g747 725 ProSiteProfiles TPR repeat profile. 614 647 IPR019734 GO:0005515
Vvi5g747 725 Pfam Tetratricopeptide repeat 616 647 IPR019734 GO:0005515
Vvi5g747 725 Gene3D Tetratricopeptide repeat domain 59 577 IPR011990 GO:0005515
Vvi5g747 725 SUPERFAMILY TPR-like 151 550 IPR011990 GO:0005515
Vvi5g747 725 Gene3D Tetratricopeptide repeat domain 578 721 IPR011990 GO:0005515
Vvi5g747 725 MobiDBLite consensus disorder prediction 52 66 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g747 Vvi7g594 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g747 K21843 - vvi:100261272 1384.39