Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g750 ATGATAAAACGTCTATATGTTTATGCTTTCGCCGTTCGCCTCATTGCAGAGAGAAGTTGCGGCCGCGTTATCGTCCCAGTGCTATTTAGAGACAGCCTCAACTTTTATCAAGTTGTATCTTTGGCTACTGACCTTACTGAGCTTTACCTGGATAATTTCAAAGAGGGAACTGCTGCTAGGACAAGACCTTTCAGCTTTGATGAAATAATGCTTAGAAGGAAAAACAAGAAACTGTATGGAGATGTTAAAGATGGAGCTGGAGAAGAAGGGAATATATCAAGGAAAGATATTGTGAAGAACGTTTCTGATTGTTATGAATCTGACAAAGGTTATAAACATAATGAGGATTCCTTCCCTGGTGCCATAAATCATTCTTCAGAGGATTTTGTGAAGGTAAGTTCCAGAAAGAAGGATGAGAACACTTCCATGAAGGAAGGCAATTTAGGTAACGTAAAAGATAAGGAAAGTCATAATTCAGAAGACAAATTGAAGGCAAAACCAAACAAAGGCATGACTGACAAATCTAAAGAAGGAAAGATTAACCAAAGGGTTCATGGAAGGAAAAAAATTGATGAGAGATCAAGGCGATCAAGTGATGATTCTGAAAGTGAACCTGAAAAGAAGTTTTCAAGAGATTCAGTTGGGAAGGATAGATATGCAGACAGAAGCAGAAAATCTGAAAAAGAAAGCAAAAGGAAACACCGAACTGGAGAAGATGAGAAAAATAGAGAAAGGAATTCTATGAAGAAACATGATCCTGGAAAACGGCATGAATCTGAATTTCTGGATAGAAAGGAAAGGAGGGAATCACCGCCATCTCGAAGACAGCATTCTGATGCTGACAGGAATAGAATATCAAATAATGGTTCAAGCAGCCATTTCCGACGACATGGTGGGTCTGCAAGTGGGCTTGGTGGCTATTCACCAAGGAAGAGAAGAACTGAGGCTGCTATTAAGACTCCTTCCCCAACTAATCGCTCGCCAGAGAAGAAAAGTGCTGGTTGGGATCTCCCACCTTCTAGAACAGATGGCATGAATGCTGGTTCAGTTCTTTCTAACGAATTGCCTAGTGCTGTGCCAGTTGCTGTTCCAGTCACTGCAACTACAGCAAAGCCCCCCCTCCCTAGAATTTATTCGGATGCTGTATCAAAAAACAAGAATGTCTCCATTGACTCCATTCAACTAACACAGGCCACCCGCCCTATGAGGAGGCTTTATGTGGAAAATTTACCAGTTTCATCCTCTGAGAAAGCTCTAATGGAATGCCTTAATAACTTTTTGCTGTCTTCGGGTATTAACCATGTCCAAGGAACCCCGCCATGTATCAGCTGCATTATTCACAAAGAGAAAGGCCAAGCTCTCGTGGAGTTTCTCACACCTGAGGATGCTTCAGCAGCTCTTTCTTTTGATGGCATATCCTTCTCTGGGTCCATTCTCAAGATTAGACGCCCAAAAGACTTTGTTGACATGACTGGTGTTCAAGAGAAATTAGTAGCTGCACCTGATGCAATAAGTGATATTGTCAAGGATTCACCTCACAAGATCTTCATTGGTGGGATTTCAAGGGCTCTTTCATCTGATATGCTTATGGAGATTGCTGCTGCCTTTGGTCCCTTGAAGGCTTACCGCTTTCAGGTTAATGAGGATCTTGGTGAGCCTTGTGCTTTTCTGGAGTATGTTGACCAGTCAGTTACTCTTAAGGCTTGTGCGGGTCTGAATGGTATGAAGTTGGGAGGACAAGTTTTAACAGTAGTTCAAGCTATTCCAAATGCATTGGCTATGGAAAATACTGGAAACCTGCCATTTTATGGGATCCCCGAGCATGCAAAGCCATTACTTGAGAGGCCCACCCAAGTTCTGAAGCTTAAAAATGTGGTAAATCCAGATGACCTTTCATCACTTTCTGAAGCAGAATTGGAAGAAATATTGGAAGACATTCGGTTGGAGTGCACCAGGTTTGGCACTGTTAAATCTGTTAACATTGTCAAGTACAACAACAGTCATGTAAGCACCCTAGAAGTATATGAAGCTGCTGACAATACAGGTTCTAACTTGGGTTGTGATGGCAATAGCATGAAGGCAGAAACCTTAGGAGGAGGTACTGATAATGGCTCTATTGATGAAGTTGTGGAACGTAACAGCATTTCTGATGATAAATCTTTGACTGATCTTATAAAGAACGAACTTTGTGAACCAAGTCATATTGATAGTAACACGGCTGTTAAAGAACCAGGCTGCCCGGATGGGTCTGATGATATTCCTAGAGGACTCCCCGACCAGCTTAACAATATGAAACATGAAGTGGAACTCCGTAATGACAAGGCTGCTGATGTTATTCAAGAGGATTTTATCATCAAAAACAAATTGATGACTGTGGAAGAGGAAACCAATAGGAAGTTGTTGGGAACTTCTGCTGAATTGGATAGTTCCCCAGGAATAAAATCAGATTTTACTGGGAAGAACGACAGTGAGAAAGGGTTGTGTGATCTTGACGACATGTTTGAGGTAGGCTGTGTTCTGGTGGAGTATGGAAGAACAGAAGCCTCTTGCATGGCAGCACATTGTTTGCATGGACGATATTTTGATGACCGGGTTGTGGTCGTGGGGTATGTTGCTCTCGATCTTTACCGGATGAAGTTTCCTAGATGA 2649 42.02 MIKRLYVYAFAVRLIAERSCGRVIVPVLFRDSLNFYQVVSLATDLTELYLDNFKEGTAARTRPFSFDEIMLRRKNKKLYGDVKDGAGEEGNISRKDIVKNVSDCYESDKGYKHNEDSFPGAINHSSEDFVKVSSRKKDENTSMKEGNLGNVKDKESHNSEDKLKAKPNKGMTDKSKEGKINQRVHGRKKIDERSRRSSDDSESEPEKKFSRDSVGKDRYADRSRKSEKESKRKHRTGEDEKNRERNSMKKHDPGKRHESEFLDRKERRESPPSRRQHSDADRNRISNNGSSSHFRRHGGSASGLGGYSPRKRRTEAAIKTPSPTNRSPEKKSAGWDLPPSRTDGMNAGSVLSNELPSAVPVAVPVTATTAKPPLPRIYSDAVSKNKNVSIDSIQLTQATRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFLTPEDASAALSFDGISFSGSILKIRRPKDFVDMTGVQEKLVAAPDAISDIVKDSPHKIFIGGISRALSSDMLMEIAAAFGPLKAYRFQVNEDLGEPCAFLEYVDQSVTLKACAGLNGMKLGGQVLTVVQAIPNALAMENTGNLPFYGIPEHAKPLLERPTQVLKLKNVVNPDDLSSLSEAELEEILEDIRLECTRFGTVKSVNIVKYNNSHVSTLEVYEAADNTGSNLGCDGNSMKAETLGGGTDNGSIDEVVERNSISDDKSLTDLIKNELCEPSHIDSNTAVKEPGCPDGSDDIPRGLPDQLNNMKHEVELRNDKAADVIQEDFIIKNKLMTVEEETNRKLLGTSAELDSSPGIKSDFTGKNDSEKGLCDLDDMFEVGCVLVEYGRTEASCMAAHCLHGRYFDDRVVVVGYVALDLYRMKFPR* 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8809254 8847176 - Vvi5g750 Vvi5g750 786892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g750 882 SMART rrm1_1 404 482 IPR000504 GO:0003723
Vvi5g750 882 SMART rrm1_1 514 585 IPR000504 GO:0003723
Vvi5g750 882 MobiDBLite consensus disorder prediction 736 757 - -
Vvi5g750 882 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 48 274 - -
Vvi5g750 882 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 273 879 - -
Vvi5g750 882 CDD RRM1_U2AF65 402 484 - -
Vvi5g750 882 Gene3D - 613 687 IPR012677 -
Vvi5g750 882 SUPERFAMILY RNA-binding domain, RBD 400 589 IPR035979 GO:0003676
Vvi5g750 882 MobiDBLite consensus disorder prediction 283 297 - -
Vvi5g750 882 PANTHER RNA-BINDING PROTEIN 273 879 - -
Vvi5g750 882 PANTHER RNA-BINDING PROTEIN 48 274 - -
Vvi5g750 882 Gene3D - 760 882 IPR012677 -
Vvi5g750 882 Gene3D - 509 562 IPR012677 -
Vvi5g750 882 MobiDBLite consensus disorder prediction 130 348 - -
Vvi5g750 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 486 IPR000504 GO:0003723
Vvi5g750 882 Gene3D - 403 584 IPR012677 -
Vvi5g750 882 SUPERFAMILY RNA-binding domain, RBD 607 877 IPR035979 GO:0003676
Vvi5g750 882 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 582 IPR000504 GO:0003723
Vvi5g750 882 MobiDBLite consensus disorder prediction 130 282 - -
Vvi5g750 882 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 589 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g750 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - vvi:100266510 1484.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35