Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g753 ATGATGAAACCTCCACTGAGGTCCTACGACCCCCATTTGATCCAGGAACCCACTGTTTACAGATTGAATGAAGCCGTGATGCATTTTGGTGAGAGCATCAAGGAAATTATCAATGAGGAGTTTGGCGATGGCATTATGTCAGCCATAGACTTCTACTGCTCAGTTGACAAAGTTAAAGGTGTGGATGGAAAGGATCGTGTGGTCTTGACGTTTGATGGGAAGTATTTGCCTCATACAGAGCAGAAATCGGAGCATATGGTTTCAAGGCTAAGGCTGCAGGGAGATTAA 288 44.79 MMKPPLRSYDPHLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVLTFDGKYLPHTEQKSEHMVSRLRLQGD* 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8874202 8882011 - Vvi5g753 Vvi5g753 786895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g753 95 Pfam Cyanate lyase C-terminal domain 13 79 IPR003712 GO:0009439
Vvi5g753 95 PRINTS Cyanase signature 16 30 IPR008076 GO:0008824|GO:0009439
Vvi5g753 95 PRINTS Cyanase signature 34 50 IPR008076 GO:0008824|GO:0009439
Vvi5g753 95 PRINTS Cyanase signature 66 76 IPR008076 GO:0008824|GO:0009439
Vvi5g753 95 PANTHER CYANATE HYDRATASE 1 91 IPR008076 GO:0008824|GO:0009439
Vvi5g753 95 SMART Cyanate_lyase_2 8 81 IPR003712 GO:0009439
Vvi5g753 95 Gene3D - 15 81 IPR036581 GO:0009439
Vvi5g753 95 SUPERFAMILY Cyanase C-terminal domain 15 80 IPR036581 GO:0009439
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g753 K01725 cynS; cyanate lyase [EC:4.2.1.104] - vvi:100245884 188.734
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g753 . . . . . . . . . . . Cma14g01831 . Car14g01642 Sed12g0452 . Cpe03g01534 Bhi01g00696 Tan10g0654 Cmetu06g1756 . Hepe05g1678 . . . . . . . . . . . . Cone4ag0351 Lsi05g01753 . . . . Blo07g00277 . . . . . Bma06g01611 . . Cmo14g01872 . . . . . . . . . . . . . . . . . . . . . Csa03g01186 Chy06g00450 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013973 0 1 1 1 0 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 24