Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g756 ATGAGTAGAAGTTTGGGAATTCCGGTGAAACTGCTTCATGAAGCTGCAGGGCATGTGGTTACAGTGGAGCTCAAGAGTGGAGAACTGTACAGAGGAAGCATGATCGAATGCGAAGACAACTGGAATTGCCAACTCGAAAACATCACCTTCACTGCTAAGGATGAAGAGGCCCGTCAAGCTGCTTTTTCAACTGGAAATCTGCAGCTTGTAGGGACTGATCATTGTGCCTTCAATTCCACACAGGAAGCTTTTGGAATGAATGATTTCCGAAAAATTCCTAGTGCACTGAATGTGCTAGAATCTTCAACATGTATCCAAGGAAAGGAGCAATACTTGCTGGATCTGATGCAGACATAA 357 44.26 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDEEARQAAFSTGNLQLVGTDHCAFNSTQEAFGMNDFRKIPSALNVLESSTCIQGKEQYLLDLMQT* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8958784 8963415 - Vvi5g756 Vvi5g756 786898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g756 118 Pfam LSM domain 11 59 IPR001163 -
Vvi5g756 118 SMART Sm3 10 64 IPR001163 -
Vvi5g756 118 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SMD3A 1 109 - -
Vvi5g756 118 CDD Sm_D3 8 54 IPR034099 GO:0000387|GO:0005681
Vvi5g756 118 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 109 IPR027141 GO:0006396
Vvi5g756 118 Gene3D - 3 68 - -
Vvi5g756 118 SUPERFAMILY Sm-like ribonucleoproteins 7 58 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g756 K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3 - nnu:104603743 115.161
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .