Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g76 ATGCAGCTCTGGGAAACCACCGGTTCTCCATTAATTCCTTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGCGAAGCAATTGACAATATTCCTCTAAGTTGCCTTGTCATTGGAAACAGAGGGCTGGGCAAGATCAAGAGGGCAATATTGGGCAGTGTTAGCAACTATGTGGTGAATAATGGTTCTTGTCCAGTTACAGTGGTGAAGAATGCGGAAGAAAGTGGAAAATGA 348 45.4 MQLWETTGSPLIPLSEFSDPIISKKYGVKPDAETLDIVNCVARQKDIVVVMKVYWGDAREKICEAIDNIPLSCLVIGNRGLGKIKRAILGSVSNYVVNNGSCPVTVVKNAEESGK* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 832977 835192 + Vvi5g76 Vvi5g76 786218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g76 115 PRINTS Universal stress protein signature 68 80 IPR006015 -
Vvi5g76 115 PRINTS Universal stress protein signature 86 108 IPR006015 -
Vvi5g76 115 Gene3D HUPs 5 115 IPR014729 -
Vvi5g76 115 CDD USP_Like 42 107 - -
Vvi5g76 115 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 109 - -
Vvi5g76 115 Pfam Universal stress protein family 38 108 IPR006016 -
Vvi5g76 115 PANTHER IMP2'P 1 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g76 - - - vvi:100255026 234.187
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008854 3 1 1 1 2 1 2 1 1 1 1 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34