Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g762 ATGGATTCAGATCAAGGCAAGTTATTCATCGGTGGGATTTCATGGGAAACCTCGGAAGATAAGCTGAAGGAGTATTTTGGGAGCTACGGTGAGGTTTCTCAGGCGGTGGTGATGAGGGACAAGGCCACTGGGAGGCCCAGAGGGTTTGGCTTTGTGGTCTTTGCAGATCCTTCGATTCTCGATAGGGTTCTTCAGGAAAAACACATCATCGATGGTAGAACGGTTGAAGCTAAGAGGGCCTTATCAAGAGAGGAGCAGCAAACCTCCTCTAGAGCTGGAAATTTTAATTCTGCAAGGAACTCTGGAGGTGGTGGAAATGTAAAGACCAAGAAAATATTTGTTGGAGGGTTGCCTCCCACCCTGAGTGAAGAAGGATTTCGTCAGTATTTTGAAGCTTTTGGTCATGTGACTGATGTAGTAGTAATGTATGACCAGAGTACCCAGCGGCCTCGTGGGTTTGGATTTGTTTCCTTTGACACTGAAGATGCAGTTGATAGGGTTTTATACAAAACTTTTCATGATTTGAATGGTAAGCAAGTGGAAGTTAAGCGGGCCCTTCCTAAAGATGCCAACCCAGGTGGGGGAAGCCGTTATCAGGGCTATGGTGCTTCTGGGGGTAACCCAACTACATATGATGGTCGAATGGATTCCAATAGATACATGCAACCTCAGAATACAGGAGGTGGTTTTCCACCTTATGGTTCTTCTGGGTACAGTGCACCTGGCTATGGGTATGGTCCTGCCAATAATGGTATGGGATATGGTGGTTATGGTGGTTACGGTGTGGTGGTACTGGTTCAGCATCTTCAGGTCAATCTCCTAGCGGAGCTGCTGGGTATGGAAATCAAAGTTATGGATATGGAGGGTATGGTGGAAGTGAGGGATCTTACGCAAATCCAACTGGTTATGAGCTACAGGGGAGTGGTGGTGGCTACATGGGAGGTGGCTATGGTGATGCTAATGGGAATTCAGGATATGGAAATGCAGCATGGAAATCTGATCCATCACAGGCTTCTGGAAATTATGGAGCTCAGACAAATGGTCCTCATGGTGGGCAAGTTGGCTATGGTGGTGGATATAGTGCTCAGTCCCGACAAGCCCAGCAGCAGTAAGGGGGTGGTCCTAGCAGGATGTCAAGCATGCTTTGGGACTGGTTGGATTGCTTGA 1167 47.64 MDSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALPKDANPGGGSRYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGSSGYSAPGYGYGPANNGMGYGGYGGYGVVVLVQHLQVNLLAELLGMEIKVMDMEGMVEVRDLTQIQLVMSYRGVVVATWEVAMVMLMGIQDMEMQHGNLIHHRLLEIMELRQMVLMVGKLAMVVDIVLSPDKPSSSKGVVLAGCQACFGTGWIA* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9110995 9114911 - Vvi5g762 Vvi5g762 786904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g762 388 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vvi5g762 388 SMART rrm1_1 111 183 IPR000504 GO:0003723
Vvi5g762 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Vvi5g762 388 MobiDBLite consensus disorder prediction 80 104 - -
Vvi5g762 388 MobiDBLite consensus disorder prediction 86 104 - -
Vvi5g762 388 MobiDBLite consensus disorder prediction 186 207 - -
Vvi5g762 388 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Vvi5g762 388 Gene3D - 106 194 IPR012677 -
Vvi5g762 388 CDD RRM2_DAZAP1 108 187 IPR034131 GO:0003723
Vvi5g762 388 Gene3D - 4 88 IPR012677 -
Vvi5g762 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vvi5g762 388 SUPERFAMILY RNA-binding domain, RBD 108 214 IPR035979 GO:0003676
Vvi5g762 388 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 261 - -
Vvi5g762 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Vvi5g762 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 171 IPR000504 GO:0003723
Vvi5g762 388 PANTHER - 1 261 - -
Vvi5g762 388 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g762 K14411 MSI; RNA-binding protein Musashi - vvi:100257917 452.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g762 Vvi7g608 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76