Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g774 ATGGTCCTTCAACTAAAAACTTATTCTAATCTTCTAGCAAATGCTTCTGGAGAGGATCAAGCCAATGGTGTATCTGATTCATCACAATTTGATATTGCTTCCTCTCCCAATGGCGAGGTGAAAATTTCCCTCATCCTCAACACTTCTCAGCAATCTGGTTGTCACATTCCAAATTTAGATGCAGTTTCAAAAGCACTGGAGGATAAGTGCCGTGGCACGTATGGAATTACAGAACCTAGTTTCTCAGTGATGAAATTGATGCAAGAATTCTGTGAGTACTTCTTAGCAATAGGTGCTGATTCTACCGATGACGAAAAGTTAAAGACCATGGAAACATCATCAACACTTGATATATTAAAGGAACCTGCAGCACAAGATGTGCTTGGCAGAGGTGATCATAAAGGCAAGTTTTGCATTCCATCAAGTTCTTCAAATGGATCTGTCAAATGTCAGAATCTTGTTGAAGTGGAATCTTTGAATTCATGTGGTATAGTGGCTGTTCAGAAGCATTGTTTCTCTGTTGACACAGTGAAACCCCTTCAATATTTTGATGACATAACCAAAGGTGAAGAAATGGTAAAGATCTCCTTGGTAAATGGAACCAGCTCCCAACTTCCTCCCAACTTTTTCTACATTCCACAGAACATAGTTTTCCAAAAAGCATATGTGAATTTTGCGCTTGCTCGTATATCAGATGAAGATTGTTGTTCAAATTGTTTTGGGGATTGTACATCATTGGCCATACCTTGTGCATGTGCCCGTGAAACTGGGGGTGAATTTGCTTACCAACAAGGAGGACTTGTAAAGGAAAAGTTTCTAGAGGAATGTATCTCTATGAATCGTGACCCTCAAAACCATCGCCTTTTTTATTGCAAAAATTGCCCACTAGAAAGGTCTAGGAATGAAAACACATCTAATCCATGCAAAGGCCATTTAGTGAGAAAGTTCATAAAAGAGTGCTGGTGTAAATGTGGATGCAGTAAGAAGTGTGGAAACCGGGTTGTTCAGCGTGGTATAACAGTGAATTTGCAGGTATTTTTGACTCCTGAAGGGAAAGGTTGGGGTCTCCGAACTCTGGAGAACTTGCCAAAAGGTGCTTTTGTTTGTGAATATGTGGGAGAAATAGTAACCAACACAGAATTATATGAGCGAAATTTGCGAAGCACCGGTAAGGAGCGACATACATACCCAGTGCTGCTAGATGCAGATTGGGGTTCAGAGGGAGTCTTAAAGGATGAAGAAGCCCTTTGTTTGGATGCAACATTTTATGGTAATGTTGCAAGATTTATTAATCACAGATGTTTTGATGCCAACTTGGTTGAGATCCCAGTAGAAGTGGAGACCCCAGATCATCACTATTATCATCTTGCCTTTTTCACAACAAGAAAGGTCGATGCTTTGGAAGAGCTGACTTGGGACTATGGCATTGACTTTGATGACCATAATCATCCAGTGAAGGCATTCCGATGTTGCTGTGAAAGCAAGGGCTGCCGAGACACAAGGAATTCAAAGAGACATGGTGTTAAAAGGCGAAAGATGGAGATGAAGGCGTAA 1554 40.8 MVLQLKTYSNLLANASGEDQANGVSDSSQFDIASSPNGEVKISLILNTSQQSGCHIPNLDAVSKALEDKCRGTYGITEPSFSVMKLMQEFCEYFLAIGADSTDDEKLKTMETSSTLDILKEPAAQDVLGRGDHKGKFCIPSSSSNGSVKCQNLVEVESLNSCGIVAVQKHCFSVDTVKPLQYFDDITKGEEMVKISLVNGTSSQLPPNFFYIPQNIVFQKAYVNFALARISDEDCCSNCFGDCTSLAIPCACARETGGEFAYQQGGLVKEKFLEECISMNRDPQNHRLFYCKNCPLERSRNENTSNPCKGHLVRKFIKECWCKCGCSKKCGNRVVQRGITVNLQVFLTPEGKGWGLRTLENLPKGAFVCEYVGEIVTNTELYERNLRSTGKERHTYPVLLDADWGSEGVLKDEEALCLDATFYGNVARFINHRCFDANLVEIPVEVETPDHHYYHLAFFTTRKVDALEELTWDYGIDFDDHNHPVKAFRCCCESKGCRDTRNSKRHGVKRRKMEMKA* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9227787 9230583 - Vvi5g774 Vvi5g774 786916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g774 517 Pfam SET domain 353 475 IPR001214 GO:0005515
Vvi5g774 517 Gene3D SET domain 186 500 IPR046341 -
Vvi5g774 517 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 516 IPR025776 -
Vvi5g774 517 ProSiteProfiles SET domain profile. 341 475 IPR001214 GO:0005515
Vvi5g774 517 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 152 501 - -
Vvi5g774 517 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 13 152 - -
Vvi5g774 517 CDD SET_SETDB-like 207 475 - -
Vvi5g774 517 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2 ISOFORM X1-RELATED 152 501 - -
Vvi5g774 517 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2 ISOFORM X1-RELATED 13 152 - -
Vvi5g774 517 SMART preset_2 183 325 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi5g774 517 Pfam Pre-SET motif 186 333 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi5g774 517 SMART set_7 341 481 IPR001214 GO:0005515
Vvi5g774 517 SUPERFAMILY SET domain 195 498 IPR046341 -
Vvi5g774 517 ProSiteProfiles Pre-SET domain profile. 235 338 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g774 - - - vvi:100252920 1021.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g774 Vvi7g620 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004987 2 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14872 PF05033 Pre-SET 5.40E-16 No_clan Vvi TR