Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g778 | ATGAACTGCTCCATGTCCGGCGAGGTGCCGGAAGAGCCGGTTGTTTCCAAGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTGTTCCAATACAAACAGGAAAGATAGTGAAGCCCAGACCTGTACAGGCTGCTAGCATACCTGGGATGCTTGGAATGTTCCAGATTGAATGGGATGGCTTGATGCTATCCAATTTTGCGTTGGAGCAACAACTGCATACTGCTAGGCAGGAGCTAAGTCATGCTTTGTACCAGCATGATGCTGCTTGTCGTGTAATTGCAAGACTAAAAAAAGAAAGGGATGAAGCAAGGTCTCTACTTGCTCAATCAGAAAGACAGATACCCATGTCAATGTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAGCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAATTTCTGCTAGTATCATTACAGAACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGACAGATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTCTCTAGCTATCCTCTCCACAAAACTAACAAACCAGGCATTTTATCTGCTGATATCTATTACTCCAAGGATATCATTGCAACTGGGGGGGTTGATGCAAATGCTGTACTGTTTGACCGACAATCAGGACAAATCTTATCCACGCTTAGTGGCCACTCGAAGAAGGTTACCAGTGTGAAATTTGTTACTCAGGATGACCTATTTTTAACTGCCTCAGCGGATAAGACTGTTCGTGTGTGGCAAGGGTCTGATAATGAGAACTATAATTGCCGGCACATCTTGAAGGATCATACTGCAGAGGTGCAAGCTGTCACGGTCCATGCCACAAATAACTACTTTGTGACTGCTTCTCTGGATAATACATGGTGCTTTTATGATCTTTCATCTGGTTTATGTCTGACACAGGTGGCAGATGCTTCAGGATCTGAGGGCTATACATCTGCAGCCTTTCATCCTGATGGTCTAATCCTTGGAACGGGTACCTCTGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTGTTGAATTTGACCATAGCGGAAATTATCTTGCAATTGCAGGCTCAGATATAAGAGTTTACCAAGTTGCCAATGTAAAATCGGAGTGGAACTGTATCAAAACATTCCCTGATTTGTCTGGCACAGGCAAGGCAACTTGTGTAAAATTTGGTCCAGATGCAAAATACTTGGCAGTAGGATCAATGGATCGGAACCTCCGCATATTTGGCCTCCCAGGGGATGATGGTCCGATGGAGTCATAA | 1575 | 44.51 | MNCSMSGEVPEEPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIQTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIPMSMSTATAVNASALSNGKRAAEDEELGPNGKKLRPGISASIITELTDCNAALSQQRKKRQIPTSLAPIDAVERYTQLSSYPLHKTNKPGILSADIYYSKDIIATGGVDANAVLFDRQSGQILSTLSGHSKKVTSVKFVTQDDLFLTASADKTVRVWQGSDNENYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVADASGSEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLRNFRTFTPYDSNTATNSVEFDHSGNYLAIAGSDIRVYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPGDDGPMES* | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9290310 | 9307076 | + | Vvi5g778 | Vvi5g778 | 786920 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g778 | 524 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi5g778 | 524 | CDD | WD40 | 226 | 513 | - | - | |
| Vvi5g778 | 524 | Pfam | Prp19/Pso4-like | 66 | 130 | IPR013915 | - | |
| Vvi5g778 | 524 | Gene3D | - | 204 | 515 | IPR015943 | GO:0005515 | |
| Vvi5g778 | 524 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Vvi5g778 | 524 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 524 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Vvi5g778 | 524 | Pfam | WD domain, G-beta repeat | 474 | 513 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | Pfam | WD domain, G-beta repeat | 302 | 339 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | Pfam | WD domain, G-beta repeat | 389 | 424 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | Pfam | WD domain, G-beta repeat | 256 | 293 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 393 | 433 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | Coils | Coil | 115 | 135 | - | - | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 393 | 426 | - | - | |
| Vvi5g778 | 524 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi5g778 | 524 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 262 | 294 | - | - | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 307 | 348 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 359 | 392 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 300 | 339 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 427 | 466 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 210 | 252 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 386 | 424 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 342 | 383 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 255 | 294 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SMART | WD40_4 | 473 | 514 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 262 | 294 | IPR001680 | GO:0005515 | |
| Vvi5g778 | 524 | SUPERFAMILY | WD40 repeat-like | 223 | 513 | IPR036322 | GO:0005515 | |
| Vvi5g778 | 524 | CDD | RING-Ubox_PRP19 | 3 | 54 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g778 | K10599 | - | vvi:100249408 | 1049.27 |