Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g778 ATGAACTGCTCCATGTCCGGCGAGGTGCCGGAAGAGCCGGTTGTTTCCAAGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTGTTCCAATACAAACAGGAAAGATAGTGAAGCCCAGACCTGTACAGGCTGCTAGCATACCTGGGATGCTTGGAATGTTCCAGATTGAATGGGATGGCTTGATGCTATCCAATTTTGCGTTGGAGCAACAACTGCATACTGCTAGGCAGGAGCTAAGTCATGCTTTGTACCAGCATGATGCTGCTTGTCGTGTAATTGCAAGACTAAAAAAAGAAAGGGATGAAGCAAGGTCTCTACTTGCTCAATCAGAAAGACAGATACCCATGTCAATGTCAACAGCAACTGCAGTAAATGCTTCTGCTCTTAGCAACGGGAAAAGAGCTGCGGAGGATGAGGAGTTGGGTCCTAATGGCAAGAAACTCCGTCCTGGAATTTCTGCTAGTATCATTACAGAACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGACAGATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTCTCTAGCTATCCTCTCCACAAAACTAACAAACCAGGCATTTTATCTGCTGATATCTATTACTCCAAGGATATCATTGCAACTGGGGGGGTTGATGCAAATGCTGTACTGTTTGACCGACAATCAGGACAAATCTTATCCACGCTTAGTGGCCACTCGAAGAAGGTTACCAGTGTGAAATTTGTTACTCAGGATGACCTATTTTTAACTGCCTCAGCGGATAAGACTGTTCGTGTGTGGCAAGGGTCTGATAATGAGAACTATAATTGCCGGCACATCTTGAAGGATCATACTGCAGAGGTGCAAGCTGTCACGGTCCATGCCACAAATAACTACTTTGTGACTGCTTCTCTGGATAATACATGGTGCTTTTATGATCTTTCATCTGGTTTATGTCTGACACAGGTGGCAGATGCTTCAGGATCTGAGGGCTATACATCTGCAGCCTTTCATCCTGATGGTCTAATCCTTGGAACGGGTACCTCTGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTGTTGAATTTGACCATAGCGGAAATTATCTTGCAATTGCAGGCTCAGATATAAGAGTTTACCAAGTTGCCAATGTAAAATCGGAGTGGAACTGTATCAAAACATTCCCTGATTTGTCTGGCACAGGCAAGGCAACTTGTGTAAAATTTGGTCCAGATGCAAAATACTTGGCAGTAGGATCAATGGATCGGAACCTCCGCATATTTGGCCTCCCAGGGGATGATGGTCCGATGGAGTCATAA 1575 44.51 MNCSMSGEVPEEPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIQTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIPMSMSTATAVNASALSNGKRAAEDEELGPNGKKLRPGISASIITELTDCNAALSQQRKKRQIPTSLAPIDAVERYTQLSSYPLHKTNKPGILSADIYYSKDIIATGGVDANAVLFDRQSGQILSTLSGHSKKVTSVKFVTQDDLFLTASADKTVRVWQGSDNENYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVADASGSEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLRNFRTFTPYDSNTATNSVEFDHSGNYLAIAGSDIRVYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPGDDGPMES* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9290310 9307076 + Vvi5g778 Vvi5g778 786920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g778 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Vvi5g778 524 CDD WD40 226 513 - -
Vvi5g778 524 Pfam Prp19/Pso4-like 66 130 IPR013915 -
Vvi5g778 524 Gene3D - 204 515 IPR015943 GO:0005515
Vvi5g778 524 SUPERFAMILY RING/U-box 1 53 - -
Vvi5g778 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 524 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Vvi5g778 524 Pfam WD domain, G-beta repeat 474 513 IPR001680 GO:0005515
Vvi5g778 524 Pfam WD domain, G-beta repeat 302 339 IPR001680 GO:0005515
Vvi5g778 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Vvi5g778 524 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Vvi5g778 524 Coils Coil 115 135 - -
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Vvi5g778 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Vvi5g778 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 392 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 300 339 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 210 252 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 342 383 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 255 294 IPR001680 GO:0005515
Vvi5g778 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Vvi5g778 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Vvi5g778 524 SUPERFAMILY WD40 repeat-like 223 513 IPR036322 GO:0005515
Vvi5g778 524 CDD RING-Ubox_PRP19 3 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g778 K10599 PRPF19, PRP19; pre-mRNA-processing factor 19 [EC:2.3.2.27] - vvi:100249408 1049.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g778 . . . . . Bpe14g01276 . . . . Cma06g01297 Cma14g01841 Car06g01113 Car14g01649 Sed02g1438 Cpe08g00356 Cpe03g01541 Bhi01g00680 Tan10g0634 Cmetu06g0539 . Hepe05g1688 . Lcy11g1702 . . . . . . . Cone14ag0178 Cone15ag0188 . . Lsi05g01766 . . Cme06g00455 Blo02g00770 . Bda11g00647 Bda13g00041 . Bpe13g00538 Bma02g00753 Bma06g01616 . Cmo06g01305 Cmo14g01882 . . . . . . . . . . . . . Cla05g00413 Cam05g0451 Cec05g0458 Cco05g0459 Clacu05g0448 Cmu05g0425 Cre05g0488 . Csa03g01174 Chy06g00436 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004919 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41