Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g784 ATGGCTGCCACCGCCGCCGCCGCCATCGGATCTTCTTTCTCCACTACCATGCACACCCTCAAGCTCTCCCGGTCCAAACACTGCCCATCCGATGCTCTCCTCAGAATCATTTCAACCCCCATATTTAAAGTACCATCAATCTCTCACTCTCACGTGATCGACCCTCCTTTGTCTCTGCCCATCTCGCACAAGTGGAGGGCCCCCAGAATATCCGCTGCTGTTGCACAGGAAGAGGCGGCAGCCACGGCTCCGGTGGAGGAGGAGCAGCAGCAGGGGCAGGAGGAAGGAGAGCAAGTGTTGAGAGAAGAAGGAGCCGAGTCTCCTGTCAATACTAAGCTCTATTTTGGGAACTTGCCTTATAGCTGTGACAGTGCCCAATTGGCTGGAATTATTCAAAACTATGGCAGTCCAGAACTGGTTGAGGTTCTTTATAATAGGGATACTGGAAGAAGCAGAGGATTCGCATTTGTGACAATGAGTAGTGTCGAAGATTGTAATGCAGTCATTGAAAATCTTGATGGAAGTGAATATGGTGGTCGAACCTTGAGGGTGAATTTTTCAGACAAGCCTAAACCTAAACTTCCATTATATCCAGAAACTGAATACAAGCTTTTTGTTGGAAATTTATCCTGGTCAGTCACATCTGAAAGCCTAAACCAAGTTTTTCAAGAATATGGCAATGTGATTGGAGCAAGGGTTTTGTATGATGGAGAGACAGGAAGGTCCCGTGGCTACGGTTTTGTATGCTATTCAACGAAAGCTGAGATGGATACTGCCCTTGAATCTCTTAACGGAGTGGAACTAGAAGGACGGGCAATTCGTATTAGTTTAGCTCAAGGAAGACGATCATGA 852 47.18 MAATAAAAIGSSFSTTMHTLKLSRSKHCPSDALLRIISTPIFKVPSISHSHVIDPPLSLPISHKWRAPRISAAVAQEEAAATAPVEEEQQQGQEEGEQVLREEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLAQGRRS* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9396154 9400042 + Vvi5g784 Vvi5g784 786926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g784 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Vvi5g784 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 274 IPR000504 GO:0003723
Vvi5g784 283 SMART rrm1_1 203 276 IPR000504 GO:0003723
Vvi5g784 283 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vvi5g784 283 PANTHER TRANSFORMER-2-RELATED 83 150 - -
Vvi5g784 283 PANTHER TRANSFORMER-2-RELATED 147 187 - -
Vvi5g784 283 PANTHER TRANSFORMER-2-RELATED 194 283 - -
Vvi5g784 283 SUPERFAMILY RNA-binding domain, RBD 104 194 IPR035979 GO:0003676
Vvi5g784 283 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Vvi5g784 283 Gene3D - 64 186 IPR012677 -
Vvi5g784 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vvi5g784 283 MobiDBLite consensus disorder prediction 78 103 - -
Vvi5g784 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Vvi5g784 283 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 147 187 - -
Vvi5g784 283 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 83 150 - -
Vvi5g784 283 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 194 283 - -
Vvi5g784 283 CDD RRM_HP0827_like 112 186 - -
Vvi5g784 283 Gene3D - 189 283 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g784 - - - vvi:104879303 515.768
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28