Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g787 ATGTCTCGCCTACGTCCTTTGCAGCTCCTCGAAATCAATCTCATCTCCGCCCAGGACTTGGCCCCCGTCGGACGATCCATGCGCACTTACGCGATCGCTTGGGTCCATCCCGATCGCAAACTCTCCACCCGCATCGACTCCACCGGCCACAACAGTCCCACATGGAACGACAAGTTCGTCTTCCGGGTCGACGACGAATTCCTCAGGGCCGACACCTCCGCCGTCATGATCGACATCTATTCCCAGCATTGGTTCCGCGACTATCACGTGGGCACCGTCCGGATTCTTGTAGGGAACCTTATTCCGCCCTCGGTGCGGCCGGGCCACCGCACCCAAATGGGCATGCGGTTCATGGCGCTCCAAGTGCGGCGGTCGTCGGGCCGGCCGCAGGGGCTTTTGAACATTGGTGTGGCGCTGCTTGACAGCTCCATGAGGAGCATGCCTCTCTACAAGTTTGTGGATCTCCTGAAGAAGAAGTCTGGTGCAAAAGCCAGTTCAATGCTAAACGGGTCTGAAGTGAGTTACCCAGTGATCAAAAGCAAAGGCAGTATTTTGTCAGCGGGCAGCACTGATTTAGGGGAACCCCTGATGAAGAAGACAAATGGGAAAGCCGATTCGTTAATCAACAGCTCGGAGGGTGGGGAATTCACCAAAGGAAAGGTGGGAACCAAATTTATCGGGTTCGACTTCGGATCAAAAGCAACTCCAAAAACGTCCGGATTAGAGTTCTGGGGCCCCGGGAAAGGAGGGTTAAGATCCTTCAAGCTCAACGATTACGGAGGCCCCAAGAACATCACAACCGGATCCATGTTGTCGGAGTCAGAGGTGGGGCCATCGCCGTCGGAGGTGGCGGCAGCCATCGCCCACGATAGATGCCGGCAGGCGGAGGATGGCAACAACTCCGCACTGGACGGATGGAGCTTGAACAGCAGCGAGGAAGGATTGCGGTCGAAGCTACAGAGGTGGCGGACGGAGCTGCCGCCGCTGTACGACAGAGGGGCTTACGGGATTTACAGAACCCCAGGCGGACACGTCCGGAGACACACGGAGGGTGACGAACCAGACGGAAGCGGATTGTTTTCGTGCTTTGGGAACATATGCGGGTACGAGTGCTCCATAGTATGCGGAGGCAACCCTAACCCTTCCTCCAGGAGAAAAAAAAGAAAAAAAAGAAAAAAGAAAAATAAAATAACAACAACAACAACAACAACAACAACAACAACAATAATAATAATAATAATAATAATAATAGTAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACTAATAATTAG 1344 50.37 MSRLRPLQLLEINLISAQDLAPVGRSMRTYAIAWVHPDRKLSTRIDSTGHNSPTWNDKFVFRVDDEFLRADTSAVMIDIYSQHWFRDYHVGTVRILVGNLIPPSVRPGHRTQMGMRFMALQVRRSSGRPQGLLNIGVALLDSSMRSMPLYKFVDLLKKKSGAKASSMLNGSEVSYPVIKSKGSILSAGSTDLGEPLMKKTNGKADSLINSSEGGEFTKGKVGTKFIGFDFGSKATPKTSGLEFWGPGKGGLRSFKLNDYGGPKNITTGSMLSESEVGPSPSEVAAAIAHDRCRQAEDGNNSALDGWSLNSSEEGLRSKLQRWRTELPPLYDRGAYGIYRTPGGHVRRHTEGDEPDGSGLFSCFGNICGYECSIVCGGNPNPSSRRKKRKKRKKKNKITTTTTTTTTTTIIIIIIIIIVIVIIIIIIIIIIIIIIIIIIIIIIIITNN* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9426103 9432904 + Vvi5g787 Vvi5g787 786929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g787 447 MobiDBLite consensus disorder prediction 382 397 - -
Vvi5g787 447 CDD C2_SRC2_like 10 135 IPR044750 GO:0006952
Vvi5g787 447 Pfam C2 domain 9 102 IPR000008 -
Vvi5g787 447 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 376 - -
Vvi5g787 447 SMART C2_3c 9 109 IPR000008 -
Vvi5g787 447 Gene3D C2 domain 7 148 IPR035892 -
Vvi5g787 447 PANTHER INGRESSION PROTEIN FIC1 1 376 - -
Vvi5g787 447 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vvi5g787 447 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 142 IPR035892 -
Vvi5g787 447 MobiDBLite consensus disorder prediction 380 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g787 - - - vvi:100256206 471.855
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g787 . . Bda03g01098 Bda08g00001 Bpe04g00982 Bpe14g01285 Bma04g01023 . Cmo08g01028 Cmo17g00136 . . . . . . . . . . . . . . Cla06g00700 Cam06g0751 Cec06g0757 Cco06g0769 Clacu06g0742 Cmu06g0725 Cre06g1501 . . . . . Csa02g01025 Chy05g00289 . Blo02g00684 . . Bda13g00035 Bpe05g01111 . Bma02g00748 . Sed09g0214 . . Cma08g01057 Cma17g00133 Car08g00933 Car17g00119 . . Bhi12g01558 Tan06g2367 Cmetu05g1475 . . . Lcy13g0413 . . . . . . . Lsi09g01193 . . Cme05g00621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005929 3 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 38