Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g79 ATGTTACAGGAAAACCCCTCTACCTCTTTATGTAAAGGTCAAACTCCTGTCGTCACAAACTGTCTGATGTTTGAAAAAAAGAGGCTAAGACACGGAGCATATTTCATTCTACCCAAAAGCCTGAACTCCATTCTCATCCACTTTCTCAGACCATCTCCACAAATGGTCTCATCCATCTCCACCTTGGTCCTCCTCCTTGCCACCATTTCTTCGGTCACTGCCGCCACCGCAAATGACAATTACACCACCCTGCTCAGCCTCAACTGCAACGGTACTAGAGCTGTCAATACCCAATCATTCGATGTGAATTTTGTGGATGCCATGGAAATTATATCTCAGGAAATTGCCAGCTCCGGTTTTGGCATGGCGGAATCCGGTGAAAACGCTACGGACAAGGCTTATGGGCTCGGACAGTGCCTGAATTACCTCTCTAATGTAGATTGCAGGCTCTGTTATTCACAGAGTAGAGTCCAGCTTCCACTTTGCTTGCCATCAACTTCTGCCCGGGTTTACCTTAATGGTTGCTTCCTAAGGTATGGAAACTACAACTTCTCTGAAGAAGCCGTGGATGATTTGGATTCTGTGGCTTGTGGGTCTTCGGGGAATGTAACAGAGGTTGGATTCAGAGACGGGGCTAATGGGCTGATTCAGAATTTGACAAATGGTGCTTATGAAGATAGAGACTATTACAAAGAAGGGAATGCTACGATTTCTTCGGATGTCAAAATTTATGGAGTTGCTCAATGTTGGAGATCTCTGAATAAAAGTGGGTGCAGAGATTGTCTGGAAAAAGCAAGAGAGAAAATAGTTGGTTGTTTTCCTGCTTCTGAGGGAGCAGCTTTGAATGCTGGGTGTGTTGTTAGGTATTCAATGAATCCATTTTATGTGGCATCCTCAGCCAGCAGTGGTTCTTCTTCAGCAACTCGTCGTCGTGCGCTGGTTGCAACGTTATCGATTATTGCTGCAGTTTTGGTTATAGGGGCAGCTATTCTTTGGGGAAGAAGGCGACCTCCTACCAATGGTGATAGTGAAAACCCTGATGGCAGCTCAGAAATCCTCAGATTGATTTCAGAATCCCATCTCAGTTTCAAGTATGATGACCTGAGAAAAGCAACAAAGGACTTTGATCTGGGAAACAAGATAGGCCAAGGGGGATATGGTTCAGTTTATAAGGGAACCCTACCTGATGGGAGGGAAATTGCGGTCAAGAGACTCTTCATCAATACAACACAATGGCTGGATCAGTTCTTCAATGAAGTAAATCTAATCAGCCAGGTTCAACACAAAAACCTTGTTAAACTTCTTGGCTGCAGTGTAGAAGGCCCTGAGAGCCTCTTGGTCTATGAATACCTCTGCAACACCAGCCTTGATCGCTTTCTTTTCGATTCATTTAGGAAGAAAGCTTTGGATTGGGGGAAGAGGTCCGATATCCTTGTTGGTACAGCAGAAGGACTAGCTTACCTCCATGAAGCTTCTGAGGTCAGGATCATTCATAGAGATATCAAAGCTAGTAATATTCTTCTAGATGAAAGGCTGAAGCCAAAAATCGCAGATTTTGGGCTTGCAAGGTACTTTGCTGAGGGTCAGAGTCATCTCAGCACGGGTTTAGCCGGAACTCTCGGTTACATGGCTCCTGAATACGTCGTTCATGGGCAGTTAACAGAGAAGGCCGATGTCTACAGCTATGGAATACTTGTTCTGGAAGTACTCACAGGCAAGAAAAGTAATAGTTCCGTATCATCGTCTACTGAAAGCCAATCCCTCATTTCCCAGGTATGGGGGCATTTCAATACGAAAACACTGATTCAAGTACTTGATCTTGATCTTCAAGACCAGTGTTCTGAAAAAGAAGCTATAAATGTGTTCCAAGTAGGACTGCTCTGCACACAAGCATCCCCTAATCTTCGGCCACCAATGTGGAAGGTAGTTGAGATGCTGACAAGTAAATCTAAAGATCTTCCATTGCCCACACAGCCTCCTTTTGTAAACGTCAAGGGTGTTGAACTCAGGAGCAGCGGCTCTGAGAGCTCGATGAAGGGCTCATCATCTTCAAAGTTCCCGGTTTCAATGAACCGGATGTCACTGAGTATTATGCAAGGAAGATGA 2106 44.82 MLQENPSTSLCKGQTPVVTNCLMFEKKRLRHGAYFILPKSLNSILIHFLRPSPQMVSSISTLVLLLATISSVTAATANDNYTTLLSLNCNGTRAVNTQSFDVNFVDAMEIISQEIASSGFGMAESGENATDKAYGLGQCLNYLSNVDCRLCYSQSRVQLPLCLPSTSARVYLNGCFLRYGNYNFSEEAVDDLDSVACGSSGNVTEVGFRDGANGLIQNLTNGAYEDRDYYKEGNATISSDVKIYGVAQCWRSLNKSGCRDCLEKAREKIVGCFPASEGAALNAGCVVRYSMNPFYVASSASSGSSSATRRRALVATLSIIAAVLVIGAAILWGRRRPPTNGDSENPDGSSEILRLISESHLSFKYDDLRKATKDFDLGNKIGQGGYGSVYKGTLPDGREIAVKRLFINTTQWLDQFFNEVNLISQVQHKNLVKLLGCSVEGPESLLVYEYLCNTSLDRFLFDSFRKKALDWGKRSDILVGTAEGLAYLHEASEVRIIHRDIKASNILLDERLKPKIADFGLARYFAEGQSHLSTGLAGTLGYMAPEYVVHGQLTEKADVYSYGILVLEVLTGKKSNSSVSSSTESQSLISQVWGHFNTKTLIQVLDLDLQDQCSEKEAINVFQVGLLCTQASPNLRPPMWKVVEMLTSKSKDLPLPTQPPFVNVKGVELRSSGSESSMKGSSSSKFPVSMNRMSLSIMQGR* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 850561 854096 - Vvi5g79 Vvi5g79 786221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g79 701 CDD STKc_IRAK 381 647 - -
Vvi5g79 701 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Vvi5g79 701 Gene3D Phosphorylase Kinase; domain 1 342 450 - -
Vvi5g79 701 Pfam Protein kinase domain 377 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g79 701 Pfam Salt stress response/antifungal 205 290 IPR002902 -
Vvi5g79 701 Pfam Salt stress response/antifungal 94 182 IPR002902 -
Vvi5g79 701 Gene3D Transferase(Phosphotransferase) domain 1 451 659 - -
Vvi5g79 701 Gene3D - 194 294 IPR038408 -
Vvi5g79 701 Gene3D - 80 184 IPR038408 -
Vvi5g79 701 SUPERFAMILY Protein kinase-like (PK-like) 360 667 IPR011009 -
Vvi5g79 701 SMART serkin_6 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g79 701 ProSiteProfiles Gnk2-homologous domain profile. 190 294 IPR002902 -
Vvi5g79 701 ProSiteProfiles Protein kinase domain profile. 375 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g79 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Vvi5g79 701 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 72 686 - -
Vvi5g79 701 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 72 686 - -
Vvi5g79 701 ProSiteProfiles Gnk2-homologous domain profile. 82 184 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g79 - - - vvi:100267135 1298.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g79 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005816 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 5 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76680 PF00069 Pkinase 7.90E-48 CL0016 Vvi PK