Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g793 ATGTACTGGCTGTCAACCAAAAACGTCGTCGTTTCATTCCCTCGATTCTACTCTCTCGCTCTTCTTCTCCGTTCCCCTGCCTGCAAATACACTTCATTTCGTTCTTCTACACTTCTACTCCAACAGTTTGAGAAGAGCCGATGTCTCAACGAAAGGAGGGTTTTGAAAGGAGCTGGAAGAATGACAAAAAATGTTATAGGATTGCAAAATGAGCTAGATGAAAAGGATCTTTCTCACATAATGTGGTGGAAGGAGAGGATGCAAATGTGTAAAAAGCCGTCCACTGTCCACCTTGTTAAAAGGCTTATATATTCCAATTTGCTAGGAGTGGATCCTAACTTGAAAAATGGGAATCTAAAAGAAGGAACGCTGAACTGGGAGATGTTGCAGTTCAAGTCAAAGTTTCCTCGTGAAGTTTTACTCTGCAGAGTAGGGGATTTTTATGAAGCCATCGGAATTGATGCTTGTATTCTTGTTGAATATGCTGGTTTGAATCCTTTTGGTGGTTTGCGCTCAGACAGTATACCAAGAGCTGGCTGCCCAGTCATGAATCTACGACAAACTTTGGATGACCTGACACGTAGCGGGTATTCAGTTTGCATAGTGGAGGAAGTTCAGGGTCCAACTCAAGCTCGTTCTCGTAAAGGTCGTTTTATCTCTGGGCATGCGCATCCGGGTAGTCCTTATGTATTTGGACTTGTTGGGGTTGATCATGATCTTGATTTTCCAGAACCAATGCCTGTAGTTGGAATTTCTCGTTCTGCGAAGGGTTATTCTATAATTTTAGTCCTTGAGACTATGAAGACGTTTTCAGTAGAGGATGGTCTGACAGAAGAGGCTTTAGTTACCAAGCTTCGCACTTGTCACTACCATCATTTATTGCTGCATACATCTCTGAGACGCAACTCCTCAGGTACTTGTCGTTGGGGAGAATTTGGTGAGGGAGGACTATTATGGGGAGAATGTAGTGCTAGACACTTTGAATGGTTTGAAGGGGATCCTGTATCTCAACTTTTGTTTAAGGTGAAGGAGCTCTATGGTTTTGATGATCAAGTTACATTTAGAAATGTCACTGTGTCTTCAGAGAAAAGACCCCGTTCTTTACACCTTGGCACAGCTACACAAATTGGTGCCATACCAACAGAGGGCATACCGTGTTTGTTAAAGGTGTTGCTTCCATCAAATTGCACTGGTCTACCTCTTTTGTATGTTAGAGATCTTCTTCTCAACCCTCCTGCTTATGAGATTGCATCCATAATTCAAGCAACATGCAGACTCATGAACAATGTAACGTGCTCGATTCCTGAGTTTACTTGTGTTTCCCCTGCAAAGCTTGTGAAGCTACTTGAGCTTAGGGAGGCTAATCATATTGAGTTCTGCAGAATAAAAAGTGTACTTGATGAAATATTGCAGATGCATAGAAACTCTGATCTTAACAAAATCCTTAAATTATTGATGGATCCTACCTGGGTGGCAACTGGATTGAAGATTGACTTTGACACATTGGTGAACGAATGTGAATGGATTTCAGCTAGAATTGGTAAAATGATCTTTCTTGATGGTGAAAATGATCAAAAGATAAGTTACCATCCTATCATTCCAAATGACTTTTTTGAGGACATGGAATCTCCTTGGAAGGGTCGTGTGAAGAGGATCCATGTAGAAGAAGCATTTGCTGAAGTGGAAAGAGCAGCTGAGGCATTATCTTTAGCTATCTCCGAAGATTTTCTACCTATTATTTCAAGAATAAAAGCTACCACAGCCCCACTTGGAGGTCCAAAAGGAGAAGTTGTATATGCTCGAGAGCATGAAGCTGTTTGGTTCAAGGGAAAACGTTTTGCACCAGTTGCATGGGCAGGTACTCCAGGGGAAGAACAAATTAAGCAGCTTAGACCTGCTATAGATTCAAAAGGTAGAAAGGTTGGATTGGAATGGTTTACCACAGTGAAGGTGGAGGATGCACTAACAAGGTACCATGAGGCTGGGGACAAGGCAAAAGCAAGGGTCTTGGAATTGTTGAGGGGACTTTCTGCGGAGTTACAAACTAAAATTAACATCCTTATCTTTGCTTCCATGTTGCTTGTCATTGCAAAGGCATTATTTGCTCATGTGAGTGAAGGGAGAAGAAGGAAATGGGTTTTCCCCTCTCTTGTAGAGTTGCATAGGTCTAAGGACATGGAACCTCTGGATGGAGCTAATTGGATGAAGATAACTGGTTTATCACCATATTGGTTGGACGTGGCACAAGGCAGTGCTGTGCATAATACAGTTGATATGAAATCATTGTTTCTTTTGACAGGACCTAATGGGGGTGGTAAATCAAGTTTGCTTCGATCAATTTGTGCAGCCGCATTACTTGGAATATGTGGATTTATGGTGCCTGCAGAATCGGCCTTGATTCCTCATTTTGATTCTATTATGCTTCACATGAAATCTTATGATAGCCCAGCTGATGGAAAAAGTTCATTTCAGATTGAAATGTCAGAGATGCGATCCATAATCACTGGAGCCACTTCAAGAAGCCTGGTGCTGATAGATGAAATCTGCCGAGGAACAGAAACAGCAAAGGGGACATGTATTGCTGGTAGCATAGTTGAAACTCTTGATAAGATTGGTTGTCTGGGTATTGTATCCACTCACTTGCATGGTATATTTACCTTGGGACTGAATACTAAGAATGCTATTTGTAAAGCAATGGGAACTGAATATGTTGATGGCAAAACAAAACCGACCTGGAAGTTGATAGATGGAATCTGTAGAGAAAGCCTTGCCTTTGAAACAGCTCAGAAGGAGGGAATTCCTGAAACAATTATCCGAAGAGCAGAAGAGCTGTATCTTTCAATCCATTCAAAAGACTTAATTACAGGGGGAACTATTTGTCCTAAAATTGAGTCAACAAATGAAATGGAAGTCTTACATAAGAAAGTTGAGAGTGCAGTCACCATTGTTTGCCAAAAGAAGCTGAAGGAGCTCTATAAGCAGAAAAACACGTCAAAACTTCCAGAGATAAACTGTGTGGCCATTTTGCCAGGGGAACAGCCGCCGCCATCAACAATTGGTGCTTCAAGTGTGTATGTGTTGTTTAGCACTGATAAGAAACTTTATGTTGGAGAGACAGATGATCTTGAAGGCAGAGTCCGTGCGCATCGATCAAAGGAAGGAATGCAGAAGGCCTCATTCCTTTATTTTGTGGTCCCAGGGAAGAGCTTGGCATGCCAACTCGAAACGCTTCTCATCAACCAGCTCCCTGTCCAGGGGTTCCAACTGGTCAATAGAGCTGATGGTAAACATCGAAATTTTGGCACATTGGATCACTCCGTGGAAGTTGTGACCTTGCATCAATGA 3345 42.06 MYWLSTKNVVVSFPRFYSLALLLRSPACKYTSFRSSTLLLQQFEKSRCLNERRVLKGAGRMTKNVIGLQNELDEKDLSHIMWWKERMQMCKKPSTVHLVKRLIYSNLLGVDPNLKNGNLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYSIILVLETMKTFSVEDGLTEEALVTKLRTCHYHHLLLHTSLRRNSSGTCRWGEFGEGGLLWGECSARHFEWFEGDPVSQLLFKVKELYGFDDQVTFRNVTVSSEKRPRSLHLGTATQIGAIPTEGIPCLLKVLLPSNCTGLPLLYVRDLLLNPPAYEIASIIQATCRLMNNVTCSIPEFTCVSPAKLVKLLELREANHIEFCRIKSVLDEILQMHRNSDLNKILKLLMDPTWVATGLKIDFDTLVNECEWISARIGKMIFLDGENDQKISYHPIIPNDFFEDMESPWKGRVKRIHVEEAFAEVERAAEALSLAISEDFLPIISRIKATTAPLGGPKGEVVYAREHEAVWFKGKRFAPVAWAGTPGEEQIKQLRPAIDSKGRKVGLEWFTTVKVEDALTRYHEAGDKAKARVLELLRGLSAELQTKINILIFASMLLVIAKALFAHVSEGRRRKWVFPSLVELHRSKDMEPLDGANWMKITGLSPYWLDVAQGSAVHNTVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSYDSPADGKSSFQIEMSEMRSIITGATSRSLVLIDEICRGTETAKGTCIAGSIVETLDKIGCLGIVSTHLHGIFTLGLNTKNAICKAMGTEYVDGKTKPTWKLIDGICRESLAFETAQKEGIPETIIRRAEELYLSIHSKDLITGGTICPKIESTNEMEVLHKKVESAVTIVCQKKLKELYKQKNTSKLPEINCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEVVTLHQ* 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9637018 9715468 + Vvi5g793 Vvi5g793 786935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g793 1114 SMART mutATP5 760 946 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi5g793 1114 Gene3D DNA repair protein MutS, domain I 115 223 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi5g793 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 166 1065 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi5g793 1114 Gene3D - 732 1004 IPR027417 -
Vvi5g793 1114 ProSitePatterns DNA mismatch repair proteins mutS family signature. 841 857 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi5g793 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 945 IPR027417 -
Vvi5g793 1114 Pfam MutS domain V 764 945 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi5g793 1114 SUPERFAMILY GIY-YIG endonuclease 1022 1082 IPR035901 -
Vvi5g793 1114 SUPERFAMILY DNA repair protein MutS, domain I 116 227 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi5g793 1114 Gene3D - 1021 1072 IPR035901 -
Vvi5g793 1114 CDD ABC_MutS_homologs 750 933 - -
Vvi5g793 1114 Pfam GIY-YIG catalytic domain 1023 1059 IPR000305 -
Vvi5g793 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 166 1065 - -
Vvi5g793 1114 Pfam MutS domain I 129 219 IPR007695 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g793 - - - vvi:100266612 2207.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32