Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g794 ATGGACAAGGTCACAGAAGCCGTGGAGAAGGCGAAGAAGGATTGGGAAGAGACGTATGGAAAAACCCTAGATCACATAAAGGCAATTGAGGATTATGGAAAATCATCCGATCAGAAGAACTCACTTCCTAGATTGAATGGCCTTGCTCAAGACGGTTTGGCTTTGCTCTCATCGTTGCAGTTCAATCTTGATCTTCTCGCTCCACAGCTGCCCACTGATGAAGACATTCAATCTGCTAACACCACACTTCAATCTTGGAAGAATCAAATTCAAAGTTTGCGTTCGAGTTTGAGGAATGCGAATTTACAAGCAAAAGCAAACATGAGGAAAGCAGCTAAGGAAGAGAGGGAACTTCTTCTGGGGGCTGGAGGAGAGTCCACGATTCGCAGACGCAATTTACAGACAAAGACTGGAATGACATCTGCTGCTGAAAATATCACAGAGAGCCTTCGCCGAACTCGCCAGCTTATGGTTCAGGAGGTCGAAAGAAACACAACCATGCTCTTGACTAATGAGGAGTCAACAGGAGTATTAAAAAAGGCTGAAAGTGAATATAAGGGACACCGCTCACTGCTCATGCGAACCAGAAACCTACTAACAACAATGCAACGTCAAGATGTCCTTGACAGGATCATCCTCATTGTTGGCTTTGTCTTCTTCTCTTGTGCTGTTCTCTACGTTGTTTCAAAGCGTATTGGCCTACTCAAGTTGCAAAGAACGGTTACTGCTGCAATAAAGGCTGGGATGGTGAGACAAGCAAACATTGGACAGGATGCTGCTGAAGATGGCATAAATCTTGCTCCTGTCCATGACAACGCAATTCGCAGAGTAGAGGTGCCATTGGAACAACATATGCACGATGAACTTTGA 870 44.94 MDKVTEAVEKAKKDWEETYGKTLDHIKAIEDYGKSSDQKNSLPRLNGLAQDGLALLSSLQFNLDLLAPQLPTDEDIQSANTTLQSWKNQIQSLRSSLRNANLQAKANMRKAAKEERELLLGAGGESTIRRRNLQTKTGMTSAAENITESLRRTRQLMVQEVERNTTMLLTNEESTGVLKKAESEYKGHRSLLMRTRNLLTTMQRQDVLDRIILIVGFVFFSCAVLYVVSKRIGLLKLQRTVTAAIKAGMVRQANIGQDAAEDGINLAPVHDNAIRRVEVPLEQHMHDEL* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9748663 9758707 + Vvi5g794 Vvi5g794 786936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g794 289 Pfam Sec20 141 232 IPR005606 GO:0005484|GO:0006890
Vvi5g794 289 Coils Coil 76 117 - -
Vvi5g794 289 PANTHER BNIP1-RELATED 1 272 IPR005606 GO:0005484|GO:0006890
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g794 K08497 SEC20; protein transport protein SEC20 - vvi:100245990 533.102
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g794 . . . . Bpe04g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0367 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011777 1 2 1 1 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 2 3 0 1 1 1 1 29