Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g800 ATGGGTTCTCTCATCCCATTCCAAGACCTCAATCTTCTTCCTGACCCAGCCACCTCCCCCTCCACCGCTGCCACTGCCATTACTCCCGCCCTCATTTTCCCCAAAATCGAGCCCAAGCTCGAACCCTTTGATGCTCCAACTCTACCGCTACAGTCTTTTCCCCAGAACCCTAGCCCTAATTTCTTTAACAATGTTTACTCTGAATACTACCGGATTTCTGAGTTATTCAGGACGGCTTTCTCCAAGAGGATGGAGAACTTAGGGAATATCGAAGTCTTGGATCCGGATTCACGGGCAATTGTGCCGGTGCCGGAGGAAACTAGGATTTCCAACGTGGTTGTATCGCGTCGCCGGGACCAGCGGTCGTCGGAGCTGGTGAGAGTTACGGATCTTACAATTGATCACGTGAGGTACTTCCGCGACCTCGTGAGACGAACGAGAATGTTATACGACGCGCTCCGAATCTTCTCAATGATGGAGGAGGAGAAACGCCGAGAAGTGGGCCTTATTACCAGGCGCAGCAGAGGGGATTTGAGAGCGGCGAAGTTGATGAAAGACCGAGGCTTGTGGCTGAATCGCGATAAGCGGATCGTTGGGTCGATTCCGGGGATTAACATTGGAGATTTGTTTCTTTTCAGAATGGAATTGTGTGTGGTTGGATTGCATGGTCAAGCTCAAGCCGGAATTGACTACTTGCCGGGGAGCAGGAGCTCGAACGGGGAACCAATTGCGACCAGCATTATTGTCTCTGGAATTAAGTATGAGGGTAGCGTGACAGGTAAAGTTTACGTTTATGATGGGTTATATAAAATTCATGATTCCTGGTTTGATGTGGGCAAGTCTGGTTTTGGGGTCTATAAGTATAAGCTTCTGAGAAATGAAGGACAAGCTGAAATGGGTAGTGCCATTTTAAGGTTTGCTGAGAATCTTAGGGTTAGCCCCTTGACTGTTCGACCGGTGGGTTACCTTTGTGATGATCTTTCAACGAAGAAAGAGAATATCCCTGTTTTTCTGTTCAATGATATTGATGGTGATAATGAACCAATGTATTATGAGTATCTTCCGAGGACTGTGTTTCCGCTCCATGCTTATAATCTTGGGGGAAATGGAAGTGGGTGTGACTGCGTTGCAGGTTGTACTGATGATTGCGTTTGTGCGCAGAGAAATGGGGGTGAGTTTGCTTACGATCAAAATGGGTTTCTCTTGAGAGGGAAGCCAGTGATATTTGAATGCGGGAGCTTCTGCCGCTGCCCACCAACTTGCAGGAATCGCCTGACTCAGAAAGGATTGCGGAATAGGTTTGAAGTGTTTAGATCGAGGGAAACTGGTTGGGGAGTTAGGTCCTTAGACTTGATACAGGCTGGAGCTTTTATATGTGAGTATGCTGGGGTTGTTCTCACAAGGGAGCAGGCAGCACTGTTTAGTATGAATGGTGATACTTTGATTTATCCCAATCGATTTACTGATAGATGGGCAGAATGGGGTGACTTTTCCAAAGTGTACTCGGATTATGTACGACCGATGCATCCCTCAATTCCTCCATTAGATTTTGCAATGGATGTATCAAGAATGAGGAATCTTGCTTGTTATATGAGCCACAGTTCATGTCCTAATGTGCTTGTGCAGTTTGTGCTATATGATCACCATAATTTATTGTTCCCTCGCCTTATGCTATTTGCCATGGAAAACATCCCTCCTCTGAGAGAGCTTAGCTTAGATTATGGCGTGGCTGATGAATGGACTGGGAAGCTTCCTATCTGTAACTGA 1767 46.69 MGSLIPFQDLNLLPDPATSPSTAATAITPALIFPKIEPKLEPFDAPTLPLQSFPQNPSPNFFNNVYSEYYRISELFRTAFSKRMENLGNIEVLDPDSRAIVPVPEETRISNVVVSRRRDQRSSELVRVTDLTIDHVRYFRDLVRRTRMLYDALRIFSMMEEEKRREVGLITRRSRGDLRAAKLMKDRGLWLNRDKRIVGSIPGINIGDLFLFRMELCVVGLHGQAQAGIDYLPGSRSSNGEPIATSIIVSGIKYEGSVTGKVYVYDGLYKIHDSWFDVGKSGFGVYKYKLLRNEGQAEMGSAILRFAENLRVSPLTVRPVGYLCDDLSTKKENIPVFLFNDIDGDNEPMYYEYLPRTVFPLHAYNLGGNGSGCDCVAGCTDDCVCAQRNGGEFAYDQNGFLLRGKPVIFECGSFCRCPPTCRNRLTQKGLRNRFEVFRSRETGWGVRSLDLIQAGAFICEYAGVVLTREQAALFSMNGDTLIYPNRFTDRWAEWGDFSKVYSDYVRPMHPSIPPLDFAMDVSRMRNLACYMSHSSCPNVLVQFVLYDHHNLLFPRLMLFAMENIPPLRELSLDYGVADEWTGKLPICN* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9819373 9821392 - Vvi5g800 Vvi5g800 786942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g800 588 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 13 585 - -
Vvi5g800 588 ProSiteProfiles SET domain profile. 432 575 IPR001214 GO:0005515
Vvi5g800 588 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 588 IPR025794 GO:0016571
Vvi5g800 588 SMART preset_2 324 416 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi5g800 588 Pfam SET domain 443 575 IPR001214 GO:0005515
Vvi5g800 588 Pfam SAD/SRA domain 198 256 IPR003105 -
Vvi5g800 588 Pfam SAD/SRA domain 262 296 IPR003105 -
Vvi5g800 588 SMART set_7 432 581 IPR001214 GO:0005515
Vvi5g800 588 SUPERFAMILY PUA domain-like 180 304 IPR015947 -
Vvi5g800 588 SUPERFAMILY SET domain 314 587 IPR046341 -
Vvi5g800 588 Gene3D SET domain 303 588 IPR046341 -
Vvi5g800 588 SMART G9a_1 194 296 IPR003105 -
Vvi5g800 588 PANTHER SU(VAR)3-9-LIKE PROTEIN-RELATED 13 585 - -
Vvi5g800 588 Pfam Pre-SET motif 328 424 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi5g800 588 ProSiteProfiles YDG domain profile. 199 356 IPR003105 -
Vvi5g800 588 ProSiteProfiles Pre-SET domain profile. 371 429 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vvi5g800 588 Gene3D - 180 256 IPR036987 -
Vvi5g800 588 Gene3D - 257 302 IPR036987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g800 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - vvi:100261297 896.345
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14875 PF00856 SET 2.00E-12 No_clan Vvi TR