Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g802 ATGGTGTGGTGGTCCGTGGGCAAGATCTTCAGGTCCGAGTTGAAGTGCGAGTCTAAACTTCGGGAGATGAAGAAGAAACAAAAACCCATCAGTCAATCGGATCCTGATTCTGATCTGAAATCTGTTATTCATCAGCATTCCTTGTTTTTTGACAAGTTAATTGAGCTAATCCCCGCAAGATTTTATCTCCCCAGTGACAATACAGATAAGCCATGGTTTCAGGGCCTAAGCAAGGCTGCAAAAGCTTCAGCAAAGAAACAATCAAAAGAAAATATTAAGAAAGCTCGAAGAGATCGGTTAGATCCAGAGAAATCATCTACGACACTAGATTTGTTAAACCAAAGCTTACGAAATGAGGAATTGGACAGTGAGAGTGATGGTGAAGCAGATATTAAACCAATGATTTCTGGTCTAGAAAATGATGAACGATCAGTGACTTATGAAGAACTACGGCAAAGACTTCATCGCCGAATTGAGGAGTTACAGTCAGGTCGAAAGAAAAATAAAGATGATCAACTTAAGATCAGTGATTCAGCAGCTAAATTGACTGAGGATGCATCAGAGGCTTCAAAAGAACTCACATTTGGTCATGTGAAGATTGGGAACAAAGAAGAGCTTGGAAAGAAGAAAAAGAGGAAGCTCTCAAAGTTGAAGGAGCTTGAGAAGGCAAAGAAATTGGAGGAGGAGAAGAAAGACCCAGAGAAAGGCAAGATTATTTCGAAGAAGCATTCATGGCAAGCAGCAACAAGTAGAGCTGCAGGAATCAAGGTCCACGATGATCCGAAATTGTTGAAACAAAGCATACATAAGGGGAAGAAGAGGCACCAAAAGAATGTTGAGAAGTGGAAAGAAAGAGTTGAAACTAGAGATAAAATGAGAGCACAGAAGCAGCAGACAAGATCAGAAAATATAGGTGAGAGGATTCACCAGAAGAAGATGCGGCGGATCGCAAAGAGGGAGAAAAAGCTCATGCGACCAGGGTTTGAAGGTCGCAAAGAAGGTTTTATTACCAAAGATAAAGCTTAA 1026 40.94 MVWWSVGKIFRSELKCESKLREMKKKQKPISQSDPDSDLKSVIHQHSLFFDKLIELIPARFYLPSDNTDKPWFQGLSKAAKASAKKQSKENIKKARRDRLDPEKSSTTLDLLNQSLRNEELDSESDGEADIKPMISGLENDERSVTYEELRQRLHRRIEELQSGRKKNKDDQLKISDSAAKLTEDASEASKELTFGHVKIGNKEELGKKKKRKLSKLKELEKAKKLEEEKKDPEKGKIISKKHSWQAATSRAAGIKVHDDPKLLKQSIHKGKKRHQKNVEKWKERVETRDKMRAQKQQTRSENIGERIHQKKMRRIAKREKKLMRPGFEGRKEGFITKDKA* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9854038 9862925 - Vvi5g802 Vvi5g802 786944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g802 341 MobiDBLite consensus disorder prediction 280 310 - -
Vvi5g802 341 MobiDBLite consensus disorder prediction 322 341 - -
Vvi5g802 341 MobiDBLite consensus disorder prediction 219 241 - -
Vvi5g802 341 PANTHER BNAC02G02430D PROTEIN 15 337 - -
Vvi5g802 341 Coils Coil 203 230 - -
Vvi5g802 341 MobiDBLite consensus disorder prediction 201 341 - -
Vvi5g802 341 PANTHER SURFEIT LOCUS PROTEIN 6 15 337 IPR007019 -
Vvi5g802 341 MobiDBLite consensus disorder prediction 118 137 - -
Vvi5g802 341 MobiDBLite consensus disorder prediction 83 109 - -
Vvi5g802 341 Pfam 60S ribosome biogenesis protein Rrp14 43 103 IPR029188 -
Vvi5g802 341 Pfam Surfeit locus protein 6 94 315 IPR029190 -
Vvi5g802 341 MobiDBLite consensus disorder prediction 83 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g802 - - - vvi:100263152 548.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58