Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g804 ATGTGCTATCCTTCTAAAAAACAAAATCTCATTTTTTTCAAAATTTTTGAGGGTTTGCTTGAGAAAACACCAATAGAGGTGAATGCATTTTTGTCTAATCCAACTGAATATGCATCTGCAATGAGGAATACTGGTGATGCTCAAGCTGGGGATAATTTGAATGTGTTCTCGAATGCCTTGAGAGGAGAATCTCAAATAGCACTTCACATGGCTACAACTAATGGACGTCTTGATGATGTGGAATTTCTTATCAGTCGTGGAGTGGATCTTAGTGCTTCTAATATGGAGAAGTACACTATTTGGGTTCTACAGTTGAGGGACTTTTGCACGGAGATTATCATTCATGCCACTCAGACTCAAAATGTTCTCTGTAAAAAAGGAAAAAAGATCAGGGAGCTGACTTCAGTGGTTCAGAAGAGGTTTGTTATGGAAAGTGGGACGAAAGGATGTGAGGTTATTATGAGTGGAAAACTCTGTGTTCAGTGTGCCAAGTCAATAAAGTTTAAGGATGGGTACCTAATCTTCTCTGGTCAACTTGTTAAGGATTACATTGACTCAACTGTGAGACATGTTCTCCTCAAACAGGGCATCCTTAGTATCAAGTTTGTGTTTTACTTGTGTATCTTTAGGGGTCTTTCTTTTTCTTCGTTTAAGGGTTTGCTTGAGAAAACACCAATAGAGGTGAATGCATTTTTGTCTAATCCAATTGAATATGCATCTGCAATGAGGAATGCTAGTGATGCTCAAGTTGGGGATAATTTGGAACGTGTTCTTGAATGCCTTGAGAGGAGAATCTCAATTCAGAATGAATACGGGAGCCGATTAAGCAGAGGAGATGATTCACGAGGGAGAATAACACTTCACATGGCTATAGCTAATGGACGTCTTAATGTTGTGGAATTTCTTATCAGTAATGGAGTGAGTCTTAATGCTTCTAATATAGAGAAGTATACTCTTTGGATTCTACAGTTAAGGGACTTTCATATGGAGATTATCATTCATGCCACTCAGACTCAGAATGTTCTCGGTAAAAAAGGAAGAAAGATTAGGGAGCTGACTTCAGTGGTTCAGAAGAGGTTTGAATTTCTTGAAAACAACGTGGAGCTTTATGCTGAGAAGTTTAACAATAGGGTCTTCTATGCCATTGCTCAGGCAGAGTCACTACGATTCAAGCTTCTTGGAGGACTTGTTGTTCGGAGGGCTGGCTATGGTGTTCTGAGTTTTGATCCCAAGGGCAAGCAGGGCCCCACAACACCATTGCCTAATCTGGTGACTATTCAAGCACCTAATCATACCTCATTGGCGAAAACCTTGCATGGCCAACTTTCGCATGCAATATTTGGGCCATGTGGCTTTCTTTCACTTCTTCATATTTGA 1377 40.01 MCYPSKKQNLIFFKIFEGLLEKTPIEVNAFLSNPTEYASAMRNTGDAQAGDNLNVFSNALRGESQIALHMATTNGRLDDVEFLISRGVDLSASNMEKYTIWVLQLRDFCTEIIIHATQTQNVLCKKGKKIRELTSVVQKRFVMESGTKGCEVIMSGKLCVQCAKSIKFKDGYLIFSGQLVKDYIDSTVRHVLLKQGILSIKFVFYLCIFRGLSFSSFKGLLEKTPIEVNAFLSNPIEYASAMRNASDAQVGDNLERVLECLERRISIQNEYGSRLSRGDDSRGRITLHMAIANGRLNVVEFLISNGVSLNASNIEKYTLWILQLRDFHMEIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFDPKGKQGPTTPLPNLVTIQAPNHTSLAKTLHGQLSHAIFGPCGFLSLLHI* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9935077 9953608 + Vvi5g804 Vvi5g804 786946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g804 458 ProSiteProfiles Ankyrin repeat region circular profile. 282 313 - -
Vvi5g804 458 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 85 141 - -
Vvi5g804 458 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 314 408 - -
Vvi5g804 458 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 140 205 - -
Vvi5g804 458 ProSiteProfiles Ankyrin repeat profile. 63 95 IPR002110 GO:0005515
Vvi5g804 458 ProSiteProfiles Ankyrin repeat region circular profile. 63 94 - -
Vvi5g804 458 SUPERFAMILY Ribosomal protein S3 C-terminal domain 138 205 IPR036419 -
Vvi5g804 458 Gene3D - 239 318 IPR036770 -
Vvi5g804 458 ProSitePatterns Ribosomal protein S3 signature. 163 199 IPR018280 -
Vvi5g804 458 SUPERFAMILY Ankyrin repeat 51 331 IPR036770 -
Vvi5g804 458 Pfam Ribosomal protein S3, C-terminal domain 140 201 IPR001351 GO:0003735|GO:0006412
Vvi5g804 458 Gene3D - 319 374 IPR015946 -
Vvi5g804 458 ProSiteProfiles Ankyrin repeat profile. 282 314 IPR002110 GO:0005515
Vvi5g804 458 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 108 144 IPR009019 GO:0003723
Vvi5g804 458 Pfam KH domain 327 376 IPR004044 GO:0003723
Vvi5g804 458 Gene3D - 112 209 IPR036419 -
Vvi5g804 458 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 326 381 IPR009019 GO:0003723
Vvi5g804 458 Pfam Ankyrin repeat 287 313 IPR002110 GO:0005515
Vvi5g804 458 PANTHER 40S RIBOSOMAL S3-LIKE PROTEIN 85 141 - -
Vvi5g804 458 PANTHER 40S RIBOSOMAL S3-LIKE PROTEIN 140 205 - -
Vvi5g804 458 PANTHER 40S RIBOSOMAL S3-LIKE PROTEIN 314 408 - -
Vvi5g804 458 SMART ANK_2a 282 311 IPR002110 GO:0005515
Vvi5g804 458 SMART ANK_2a 63 92 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g804 K02985 RP-S3e, RPS3; small subunit ribosomal protein S3e - pda:103712746 123.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1