Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g805 ATGATCCCCAAGACATGTACCCTCATACCTTCCCGCTACTACGCTTCTGCCTTTGAATTCGATCCCTCTCTCGCTCTCCTCCAATCCCTCCATTTCTCAGTAACTCACAAATCTCTCAAACTCACCCGACAATCCCATTCTCGAATTCTCAGTCTTGGCTTATCTCAAAACTCTTTACTTGCCACAAAACTCATCTTTGCATATGCTATATGCCAACACCCATATCATTCCCGACTCGTTTTCGATTCCCTACAACACAAGAATGTGTTTCTATGGAACTCTTTGATTAATGGGTATGCCAAAAATCGTTTATACAATGAGGCTTTTCAGTTGTTTAATCAAATGTGCTCTAGCGATGTCTTGCCCGATGATTTTACTCTCTCGACACTTTCTAAAGTTTCGAGCGAGCTGGGGGCCTTATTTTCCGGCAAATCTATTCATGGGAAAAGTATACGAATAGGATTTGTTTCCGATACTGTTGTTGCTAATTCGATAATGTCAATGTATTGCAAATGCGGGAATTTTGAGGAATCCAGGAAGGTGTTTGATGAAATGACGATTAGAAATTCTGGTTCTTGGAACGTTTTGATTGCTGGGTACGCAGTTTCAGGGAATTTGGTTGTGGGTAGACGGGTCTTTGACAGGATGAAGTGTAGGAATGTCTTTTCTTGGACAGCAATGATCAATGGTTATGTGGAGAATGGAGATTCAGATGAAGCTTTGAGTCTTTTTCGCGATATGCAGGTTATAGATGGAATAGAACCGAATAGAGTGTCACTTGTCAGTGTTCTCCCTGCATGTAGCTCCTTTTCTGGTTTATTGAGTGGAAGACAAATACATGGATTTGCTGTTAGAAAGGAATTGAACAATGAAGTCTCTTTATGTAATGCTCTCATCGATATGTATTCCAAGTGTGGGAGCTTGGATTCTGCAAGGCGTGTATTTGAGGATGACTCCTTATGTAAAGATGCAATCTCTTGGAGTTCAATGATTTCAGGATATGGATTGCATGGGAAGGGTCAAGAAGCCATTCTTCTGTATGATAAGATGCTCCAAGCTGGGATCAGACCGGACATGATAACAACAGTGGGGATTCTTTCTGCTTGTAGCCGGTCAGGATTGGTAAACGAAGGTCTTAACATCTACAGCTCAGTTATCAATGATTATGGAATTGAACCAACATTGGAGATTTTTGCATGCATTGTTGATATGTTAGGTCGAGCAGGGCAGCTCGATCCAGCATTAGATTTTATCAAAGCAATGCCTGTGGAACCTGGTCCTAGTGTGTGGGGAGCTCTGGTCAGTTGCTCCATCATTCATGGTGATCTTGAGATGCAAGAATTGGCATATAGGTTCCTTATTCAGCTAGAACCCGAGAACCCCTCCAACTATGTTTCCATATCAAATTTATATGCGTCTTCAAGGAGATGGGATGCCGTGGCTGAAGTAAGAAGAATGATGAAAGATAAGAGATTGAGGAAGGTACCTGGGTGCAGTTGGATTAGCATCAATAACAAAACTCACTGTTTCTATACATTGAAATATTCCCTGAGACAGGTTTGTTTGATCTTATTGTTTATAATCCTTTCCCCCTCCTTTTCTTGGGCTTATCATGTTGATTTTTCACATGGAAAATAG 1638 41.21 MIPKTCTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYTLKYSLRQVCLILLFIILSPSFSWAYHVDFSHGK* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9961042 9963031 + Vvi5g805 Vvi5g805 786947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g805 545 Pfam PPR repeat family 87 130 IPR002885 -
Vvi5g805 545 Pfam PPR repeat family 322 370 IPR002885 -
Vvi5g805 545 Pfam PPR repeat family 219 267 IPR002885 -
Vvi5g805 545 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Vvi5g805 545 TIGRFAM PPR: pentatricopeptide repeat domain 192 221 IPR002885 -
Vvi5g805 545 TIGRFAM PPR: pentatricopeptide repeat domain 91 123 IPR002885 -
Vvi5g805 545 TIGRFAM PPR: pentatricopeptide repeat domain 162 185 IPR002885 -
Vvi5g805 545 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Vvi5g805 545 Gene3D Tetratricopeptide repeat domain 149 275 IPR011990 GO:0005515
Vvi5g805 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Vvi5g805 545 Pfam PPR repeat 161 186 IPR002885 -
Vvi5g805 545 Pfam PPR repeat 295 316 IPR002885 -
Vvi5g805 545 Gene3D Tetratricopeptide repeat domain 323 521 IPR011990 GO:0005515
Vvi5g805 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vvi5g805 545 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 24 204 - -
Vvi5g805 545 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 207 515 - -
Vvi5g805 545 Gene3D Tetratricopeptide repeat domain 14 148 IPR011990 GO:0005515
Vvi5g805 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 255 IPR002885 -
Vvi5g805 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Vvi5g805 545 PANTHER - 24 204 - -
Vvi5g805 545 PANTHER - 207 515 - -
Vvi5g805 545 Pfam E motif 440 501 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g805 - - - vvi:100259652 655.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g805 . . Bda03g01102 . Bpe04g00977 . Bma04g01027 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008407 1 5 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32