Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g806 ATGGTGGCCAAGCCTCTGTTTGGAATCTTGTCAGATGCTTTTTACATTGGTGGTGCTCACAGAATCCCTTATATTTTCCTTGGAGCCTTTTTGCAGATTCTCTCTTGGGGGGCGTTGTCATTGATCCCAGTTGCAGGTGAAGCACTTGCTACTCTTATGCTGTGTGTTCTTCTCAGTAATCTTGGAGCATCCATTACAGAAGTTGCACAGGATGCTCTTGTTGCAGAGTATGGCCAAAAGCATAGAAAGGGTGGCCTCCAATCTTATGCTTTCATGGCTGTGGCTGCTGGTGGAATCCTTGGCAACTTATTTGGTGGATATTTTTTACAAAACACACAAACCAATACAATGTTTCTTGTATTCGCAATTCTACTCCTCTTTCAAGTTGCAGTGTCCTTGACCACGAAAGAGGATTCTCTTGGCTTACCACAACCAGTGGATGAGAATCTTGTTGGGAAATCGATCTTTGAAGGTGTTAGAGAACAGTTCTCTAACCTTGTGACAACAATTAGTGAAGATGGCATCTGTCGCCCTCTTGCTTGGGTTGTAGCTTCTATTGCCATGGTGCCAATTCTGTCAGGGCCCATCTTTTGCTACCAAACACAATGCCTTTGCCTTGATCCTTCAACTATTGGGATGTCTCGAGTGGTTAGTCAGTTGATGCTTCTATCTGCAACTGTACTTTATAATCAGTTCTGGAAAAGGATTCCCATGAGGAAACTGATTGGCACTGTGCAGATTCTGTATGCCTCCTCCCTTCTTCTGGACCTTGTTCTAGTAAGACAGATAAATCTCAGTTTGGGTATTCCAAACCAGGTGTTTGCTCTTTGTTTTTCAGGTGTAGCAGAAACTATTGCACAGTTTAAGCTCCTACCGTTCTCAGTGCTTTTTGCAAGTTTGTGTCCATCAGGTTGTGAAGGATCTCTGACTTCTTTCTTAGCATCAGCATTTTGTTTGTCATCAATATTCAGTGGGGTTTTTGGTGCTGGATTGGCTTCTCTAATTGGAATAACAGGCGGTGACTACTCGAGCCTGCCTGTGGGGATTCTGATACAGTTCCTTGCAGCTTTAGTGCCTTTGGGGTGGATGCACCTTGTACCCATGGTGGACCCAACAGCTGAAAAGGAAAGGAAGAAGGGTACGAGTAAAAGAAGTAGAAGAAATAGAAGGGTTGGAAGAGTAGCTCTTGATTCAATTTATGTTTACCGGCGAGAAAGAGAATACGAGGAGCAGAGTAGTCTTTTTGTTTTCGCATGCGTTGGCCTGTAA 1269 43.81 MVAKPLFGILSDAFYIGGAHRIPYIFLGAFLQILSWGALSLIPVAGEALATLMLCVLLSNLGASITEVAQDALVAEYGQKHRKGGLQSYAFMAVAAGGILGNLFGGYFLQNTQTNTMFLVFAILLLFQVAVSLTTKEDSLGLPQPVDENLVGKSIFEGVREQFSNLVTTISEDGICRPLAWVVASIAMVPILSGPIFCYQTQCLCLDPSTIGMSRVVSQLMLLSATVLYNQFWKRIPMRKLIGTVQILYASSLLLDLVLVRQINLSLGIPNQVFALCFSGVAETIAQFKLLPFSVLFASLCPSGCEGSLTSFLASAFCLSSIFSGVFGAGLASLIGITGGDYSSLPVGILIQFLAALVPLGWMHLVPMVDPTAEKERKKGTSKRSRRNRRVGRVALDSIYVYRREREYEEQSSLFVFACVGL* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9996137 10002158 - Vvi5g806 Vvi5g806 786948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g806 422 Gene3D MFS general substrate transporter like domains 1 391 IPR036259 -
Vvi5g806 422 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 1 410 IPR039309 -
Vvi5g806 422 PANTHER FOLATE-BIOPTERIN TRANSPORTER 9, CHLOROPLASTIC-RELATED 1 410 - -
Vvi5g806 422 SUPERFAMILY MFS general substrate transporter 2 360 IPR036259 -
Vvi5g806 422 Pfam BT1 family 1 385 IPR039309 -
Vvi5g806 422 TIGRFAM fbt: folate/biopterin transporter 3 389 IPR004324 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g806 - - - vvi:100249433 758.059
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g806 . . . . . . . . . . . Cma14g01853 . Car14g01660 . . Cpe03g01552 . . . . . . . . . . . . . . . . Cone7ag0358 Cone4ag0370 Lsi05g01781 . . Cme06g00440 . Blo07g00290 Bda11g00652 . . Bpe13g00535 . . . . Cmo14g01898 . . . . . . . . . . . . . Cla05g00399 Cam05g0435 Cec05g0441 Cco05g0440 Clacu05g0430 Cmu05g0411 Cre05g0472 . Csa03g01156 Chy06g00419 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010245 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32