Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g808 ATGGCGGCCAAAACCCCTAACGCAAGAAGAAAACGAACAGCAGTGAATCCAGACCTCGAACGGCTCGAGTCGCTCCCATGGAACCCATCTCTTCCCGACGTTGATGACCCCTTCTCGCTTTTCGTCGGATCCGACGAGCTCGAAGGAGGTTTTCTGTCTCTGGAGGAGATTGATGAATCCGAGTACGGTCTGGAAATTCATGAACCCGGACCAGAAGATAAAAAGGGGAATCCTAAGCAATCCAAGAAATCAAAGAAGCGAAAAAGTAGTGGTGACAATGATAGTTCCGGAGGTGGGGTTGAAGATGGAACTGAAGAAGAAGTGGTTGACAAGAAGAATTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGGTAACAAAGAAAAACCAGACAAATGAAGAATCTGCAACTGTTAGCAATGACAAGGATGATGTGGAAGGGGACTCTGTTGATGAAGCTGAGTTTTATGAGTGGAATGAATTAAGACTCCATCCATTGCTCATGAAATCCATACACAGGCTTGGGTTCAAGCAACCCACACCGATACAGAAAGCTTGTATTCCTGCTGCTGCTCATCAGGGAAAGGATGTTGTTGGTGCCTCGGAGACAGGATCAGGTAAAACTCTTGCTCTTGGTTTGCCCATTTTGCAACGTCTCCTTGAAGAACGAGAAAAAGCTGCCGAGCCCCTTGCAGAAAATAGTGAGGAAAAGTATGCTGAAGGAGGCATTTTGCGGGCTCTGATTATTACTCCTACAAGAGAGCTTGCACTTCAGGTTACTGATCATCTAAAGGAAGTGGCCAAGGGTACCAATGTTAGGGTGGTCCCAATTGTTGGTGGGATGTCAACCGAAAAACAGGAGAGGCTTTTAAAAGCAAGGCCTGAGATTGTTGTTGGAACTCCGGGAAGGCTATGGGAACTAATGTCAAGAGGAGAAGACCATCTTGTTGAGTTACATTCATTGTCTTTCTTTGTATTGGATGAGGCTGATAGAATGGTAGAAAATGGCCATTTTCATGAGTTGCAGTCAATAATTGACATACTTCCAAAGACCAGTGGTTCTATGGAAAGCCTCTCCCAAAATACAGAGAATTGTTTCACAGTTTCAAACATCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACTATTGCACTCTCTGCTGATTTTCGTAAGAAGCTGAAGCGCGGAGCCCTGAGATCGAAGCAACTGATGAATGATGGGTTGAATTCTATAGAAACTCTCTCTGAGCGAGCAGGGATGAGACCTAATGCTGCCATTGTTGATCTGACAAATGCATCAATTATGGCAAATAAACTTGAGGAGTCATTTATTGAATGTAGAGAAGAAGATAAAGATGCCTATTTATATTATATTCTGAGTGTCCATGGACAAGGTCGGACCATTGTTTTCTGTACATCTATTGCAGCTTTACGCCATACTTCTTCCCTATTGCGCATTCTTGGAATCAATGTTTGGACCCTTCATGCCCAGATGCAGCAGCGAGCACGTTTGAAGGCAATTGATCGTTTTCGTGGAAATGAACATGGTATACTTGTTGCTACTGATGTTGCAGCCCGAGGCCTTGATATCCCTGGTGTTCGAACTGTTGTTCATTATCAGCTTCCACATTCAGCAGAAGTTTATGTCCATAGAAGTGGAAGAACTGCTAGAGCTTCTGCTGATGGATGCAGCATCGCACTAATCTCACCAAATGATAGATCAAAATTTGCTAATTTGTGCAAATCATTTTCAAAGGAAAGTTTTCAGCGATTTCCTATAGAGAGCTCATACATGCCAGAGGTTGTAAAACGTTTATCTCTTGCACGTCAAATTGACAAGATTTCGCGGAAGGACTCCCAAGAAAAGGCAAAGAAAAGCTGGTTTGAACAAAATGCAGAAGCATTGGAATTGATTGTGGATGAATCTGATAGTGAGGAGGAAAAGGTGAAAATCCATAAGCAAAAGAAAGCCAGCTCCATGCATTTGAATAAGTTGCAACAGGAGCTCAATATGTTGCTCTCACATCCATTGCAACCAAAAACATTTTCGCATCGCTTTTTAGCAGGGGCTGGTGTTTCACCTCTCCTGCAACGTCAGTTTGAAGAACTATCTAAGCAGAAGCTAGATGATGGAAGGAGTTTGGGAGAAAGCAAGAGAAGGAAATTGCTTGTTATTGGTCAGGAATGTGTGGAACCTCTCCAGGCACTTAGGAGTGCTGGTCAGGAGGTGTGCATGGATGTGAAAGAGACTGCAGAAAAACGAAGAAGTTTGGAGAGTTTAAGGAGGAAAAGAAAAGAGGAGAAAAAACAGTTACGTGATCAACGAAGAAAGCAGAGGAAAAGACTAAAGGCAGATGTTGAGTGA 2367 43.01 MAAKTPNARRKRTAVNPDLERLESLPWNPSLPDVDDPFSLFVGSDELEGGFLSLEEIDESEYGLEIHEPGPEDKKGNPKQSKKSKKRKSSGDNDSSGGGVEDGTEEEVVDKKNFKKKKKKKKKVTKKNQTNEESATVSNDKDDVEGDSVDEAEFYEWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAAHQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENSEEKYAEGGILRALIITPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKARPEIVVGTPGRLWELMSRGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTSGSMESLSQNTENCFTVSNIQRKKRQTFVFSATIALSADFRKKLKRGALRSKQLMNDGLNSIETLSERAGMRPNAAIVDLTNASIMANKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRHTSSLLRILGINVWTLHAQMQQRARLKAIDRFRGNEHGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALISPNDRSKFANLCKSFSKESFQRFPIESSYMPEVVKRLSLARQIDKISRKDSQEKAKKSWFEQNAEALELIVDESDSEEEKVKIHKQKKASSMHLNKLQQELNMLLSHPLQPKTFSHRFLAGAGVSPLLQRQFEELSKQKLDDGRSLGESKRRKLLVIGQECVEPLQALRSAGQEVCMDVKETAEKRRSLESLRRKRKEEKKQLRDQRRKQRKRLKADVE* 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10088504 10130208 + Vvi5g808 Vvi5g808 786950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g808 788 CDD DEADc_DDX24 166 429 - -
Vvi5g808 788 Gene3D - 110 403 IPR027417 -
Vvi5g808 788 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 324 332 IPR000629 -
Vvi5g808 788 Gene3D - 431 674 IPR027417 -
Vvi5g808 788 PANTHER RNA HELICASE 74 709 - -
Vvi5g808 788 Pfam DEAD/DEAH box helicase 179 385 IPR011545 GO:0003676|GO:0005524
Vvi5g808 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 402 IPR014001 -
Vvi5g808 788 MobiDBLite consensus disorder prediction 63 79 - -
Vvi5g808 788 CDD SF2_C_DEAD 440 569 - -
Vvi5g808 788 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 74 709 - -
Vvi5g808 788 MobiDBLite consensus disorder prediction 1 146 - -
Vvi5g808 788 SMART ultradead3 174 412 IPR014001 -
Vvi5g808 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 600 IPR001650 -
Vvi5g808 788 MobiDBLite consensus disorder prediction 756 788 - -
Vvi5g808 788 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Vvi5g808 788 SMART helicmild6 479 560 IPR001650 -
Vvi5g808 788 Coils Coil 751 786 - -
Vvi5g808 788 MobiDBLite consensus disorder prediction 756 774 - -
Vvi5g808 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 577 IPR027417 -
Vvi5g808 788 Pfam Helicase conserved C-terminal domain 451 559 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g808 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - vvi:100261404 1413.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31