Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g812 ATGTGTTGCAGTAGTCTTCATATACCAACCATGATACAAAATTTTGACCAGCAAGACTATGTTTCTCGGTGCATCTGGGTGAATGGACCTGTAATAGTAGGGGCAGGCCCTTCAGGTCTAGCCATCAGTGCAGGCCTTAAAAAACAGGGTGTTCCATTTGTAGTCCTGGAGAGAGCCAACTGCATTGCCTCCCTTTGGAAAAACCACACTTATGACCGCCTCAAGCTTCACCTGCCCAAACAATTCTGTCAACTGCCTTACTTCCCATTTCCAGACAACTTCCCAGAATACCCCACCAAAGTCCAGTTCATTGACTATCTTGAATCCTATGCAAAACATTTTGAAATAACCCCGAGATTCAATGAGTCAGTGCAGTCTGCCAAGTATGATGAAACTTGTGGATTATGGCAGGACTTTGGTGGGAGTGTCATGCATGCTTGTGACTACAAATCTGGCGAGAGCTATCAAGGAAAGCGTGTACTGGTAGTGGGTTGTGGAAATTCTGGCATGGAGGTCTCTCTGGACCTCTGCAACCACAAAGCAATTCCATCAATGGTGGTTCGGAACTCGGTTCATGTATTACCAAGGGAAGTCCTGGGAAGATCAACCTTTGAATTAGCAGTTTTGATGATGAAATGGCTCCCACTTTGGCTCGTTGATAAGATATTGCTAATTATTGCAAGGCTCTTGTTGGGTAATATAGAAAAATATGGTCTGAGAAGGCCATCAATGGGTCCTTTAAAGCTCAAGAACACTCAAGGAAAGACCCCAGTTTTAGATATTGGTGCACTAGAGAGGATTAGATCTGGTGAGATCAGGGTGGTCCCCGGAATCAAAAGATTTTCTCGTGGCAGAGTCGAGTTTGTTAATGGCGAAAATCTTGAGATGGATTGTGTTATTCTGGCTACTGGGTATTGCAGCAATGTCCCTTCATGGCTGAAGGATAATGATTTCTTTTCCGAAGATGGATTGCCAAAGACTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGGCTTTATGCAGTTGGGTTCACTAAGAGAGGCCTGTCTGGTGCATCTATGGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAATTTGGAAAAAAAAGGAGAAAAAATCCCCTTGGGGGGTGTTTTTCAATTTTTAA 1227 40.67 MCCSSLHIPTMIQNFDQQDYVSRCIWVNGPVIVGAGPSGLAISAGLKKQGVPFVVLERANCIASLWKNHTYDRLKLHLPKQFCQLPYFPFPDNFPEYPTKVQFIDYLESYAKHFEITPRFNESVQSAKYDETCGLWQDFGGSVMHACDYKSGESYQGKRVLVVGCGNSGMEVSLDLCNHKAIPSMVVRNSVHVLPREVLGRSTFELAVLMMKWLPLWLVDKILLIIARLLLGNIEKYGLRRPSMGPLKLKNTQGKTPVLDIGALERIRSGEIRVVPGIKRFSRGRVEFVNGENLEMDCVILATGYCSNVPSWLKDNDFFSEDGLPKTPFPNGWKGKAGLYAVGFTKRGLSGASMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQIWKKKEKKSPWGVFFNF* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10295156 10296788 + Vvi5g812 Vvi5g812 786954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g812 408 Pfam Flavin-binding monooxygenase-like 137 310 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi5g812 408 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 16 137 - -
Vvi5g812 408 Coils Coil 354 355 - -
Vvi5g812 408 SUPERFAMILY FAD/NAD(P)-binding domain 31 181 IPR036188 -
Vvi5g812 408 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 137 356 - -
Vvi5g812 408 PRINTS Pyridine nucleotide disulphide reductase class-II signature 29 51 - -
Vvi5g812 408 PRINTS Pyridine nucleotide disulphide reductase class-II signature 155 179 - -
Vvi5g812 408 Gene3D - 30 135 IPR036188 -
Vvi5g812 408 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 137 356 - -
Vvi5g812 408 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 16 137 - -
Vvi5g812 408 Gene3D - 136 358 IPR036188 -
Vvi5g812 408 SUPERFAMILY FAD/NAD(P)-binding domain 141 305 IPR036188 -
Vvi5g812 408 Pfam Pyridine nucleotide-disulphide oxidoreductase 31 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g812 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - vvi:100240804 716.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g812 Vvi7g670 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108