Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g817 ATGATTGGCAGGTATGAGACTGAGGTTGTCAAGGAAATTGTTGATACAATCATTAGAAGATTAAACCATCAACCTTTAAGTGTGGGAAAGAGCATAGTTGGAATTGGTGTTCATTTGGAAAAATTGAAATCGTTGATGAACACTGAGTTAAATATGGTTAGCGTCATAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATCGCCAAGGCTATTTATAATGAGATCTCACATCAATATGATGGTAGTAGCTTTCTTATAAATATCAAAGAGAGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAATTTTTTAAAATAAACAATGTTAATGAAGGAAATAGTATGATAAAGAGGTGTCTAAGGTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAAGATTGGTTTCATGCAAAAAGTACAATCATCATTACATCTAGAGACAAACACGTGCTTGCTCAATATGGAGTGGATATACCATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTATTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAACCTCTCATACAATATCATAGATTATGCTGATGGCCTTCCGTTAGCACTTAAAGTTTTAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTAATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATACCCCACATGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTTGATGATATAGAAAAGGGGATATTTTTGGATATTGCATGCTTTTTCAAAGGAGATGATAGAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAGAGCATGCAATAACAACTCTAGATGATAGATGTCTCATAACTGTTTCAAAAAACATGCTAGATATGCATGATTTAATACAACAAATGGGTTGGGAGATTATTCGTCAAGAATGCCCTGAAGACCCTGGAAGAAGGAGTAGATTGTGGGATTCTAATGCCAATGATGTGCTAATAAGAAATAAAGGGACACGAGCAATTGAAGGACTATTCTTAGATAGATGTAAATTTAATCCATTACAGATTACTACAGAATCTTTCAAAGAGATGAATAGACTTAGACTGCTTAATATCCATAACCCTCGTGAAGACCAGCTATTTCTTAAAGACCATCTTCCAAGGGACTTTGAATTCTCTTCTTATGAGTTAACATATCTGCATTGGGATGGATACCCTTTAGAATCTTTGCCAATGAATTTTCACGCAAAGAACCTTGTTCAACTCGTATTAAGAGGCAGCAATATAAAGCAAGTTTGGAGAGGGAATAAGCTTCATGACAAGTTGAGGGTTATTGATCTCAGTTACTCTTTCCATCTCATCGGAATCCCAGACTTCTCAAGTGTGCCAAACTTAGAGATTCTAATTCTAATAGGGTGTGTAAACTTGGAGCTTCTTCCAAGAAACATTTACAAGTTGAAACACCTTCAAATTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAGGGCAATATGAGAAAGCTAAGGGTACTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTTCAAAGCTCCACAAAATCCCTATTCATATTTGCCACTTATCATCATTGGAAGTATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACGGGGCCATTTTAGTAGCATACCCACTACCATCAATCAGCTTTCCAGCTTGGAAGTCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTACAGAGCTTCCATCATGTCTACGGCTTTTAGATGCACACGGTTCAAATCGCACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCCGTTGGGCGCAGGATTGGAAGCACACTAGTTTTAGGGATTCTTCCTACCATGGCAAGGGAACTTGTATTGTTCTTCCCGGAAGTGATGGAATTCCCGAATGGATATTGAATCGGGGAGATAATTTTTCTAGCGTAATAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTCTCTGATGAATCTGAGGACATACCCGAAAAGGAATCTGCACATGGGCCCGAGAATGAATCAGACAATAAATCTGAGGATGAATCTACTCATTCATGGGAGAATGAAAGAGATGATAAATCTGTGGCTGAATCTTTTCATAAGAATGAACATAAACATACACATTCTTGTCGTCTGGAGTGTTTTCTGGGTGCTCTTGGTGATAGTTTTGATTTTCAATTTGTAGATCGTCCCGGCTTTCAATCCACTTGTTTTTGCTATAAAGAAGACAAGGGCGAAGATAATGAGAGTGTATCAGGTCAAACGTGGGTGGTTTGCTATTCCAAGGCGGCTATTCCGGAAATGTTTCACTCTTATCAATTGACTGATATTTTGGCTCGATTTCACATTTATTCTGAAAAAGCCTTGAAAGTGAAGGAGTGTGGAGTCCGCCTAATATACTCCCAAGACCTTCAACAAAGCCACGAGGATGCAGATGTTAGAATATGCAGAGCATGCCGACAGGATGGGACGCTTCGACGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCGGGAATCCCTTGGAACTTGATAGCTTATGTCTGCGGGATTGCAAAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCATTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTCTTTAAGTGGAACCGCCATAAAAGAGATACCATCATCAATTCAACGTCTAAGAGGGCTTCAATATTTGCTTCTGTCAAACTGCAAAAACCTTGTGAATCTTCCCGAGAGTATTTGTAATTTGACATCTTTGAAATTTCTCATTGTCGAAAGCTGTCCTAGCTTCAAGAAATTGCCAGACAACTTGGGGAGACTACAATCTTTACTTCATCTTAGTGTTGGGCCTTTAGATTCAATGAATTTTCAATTGCCTTCTTTGTCCGGTTTATGCTCCTTGAGGCAATTAGAGCTTCAAGCCTGCAATATAAGGGAAATTCCCAGTGAAATTTGTTACCTATCATCACTGATGCCCATCACTGTACATCCTTGGAAAATTTATCCAGTCAATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATTCAAAATTCAGGTATGGTTTTCATATATCATTTAACCTTTCTTTTTCTATAGACAAAATTCAGAGGGTAATTTTTGTGCAGGGGCGTGAATTTAGAAGAAGTGTCAGAACTTTTTTTGCTGAAAGTAATGGGATTCCGGAGTGGATAAGCCATCAGAAAAGCGGGTTCAAAATAACAATGAAACTTCCTTGGAGTTGGTATGAAAACGATGACTTCTTGGGCTTTGTTCTGTGCTCTCTTTATGTTCCACTTGAGATTGAGACCAAAACACATAGGATTTTCAGCTGTATATTGAATTTCGGTGATGATAGTGATTCTTTTCTCTTTGATGATCTGCGATTGGAACAAATTTGTGAATGCTGCTATTATGAAGATGCATCAAATCAAGGGTTGTTGGTATATTATTCTAAGTCGGATATTCCCGAGAAATTTCACTCAAATGAATGGAGAACCTTGAACGCTTCATTTAATGTCTACTTTGGTATTAAACCAGTGAAAGCGGCGAGGTGTGGCTTCCACTTTCTATATGCCCACGATTATGAACAGAACAATCTCACAATGGTACAAGGTAAGAAGCTGTGA 4002 38.03 MIGRYETEVVKEIVDTIIRRLNHQPLSVGKSIVGIGVHLEKLKSLMNTELNMVSVIGIYGIGGVGKTTIAKAIYNEISHQYDGSSFLINIKERSKGDILQLQQELLHGILRGKFFKINNVNEGNSMIKRCLRSNRVLVIFDDVDELKQLEYLAEEKDWFHAKSTIIITSRDKHVLAQYGVDIPYEVSKLNKEEAIELFSLWAFKQNRPQEVYKNLSYNIIDYADGLPLALKVLGASLFGKKISNWESALCKLKIIPHMEIHNVLRISFDGLDDIEKGIFLDIACFFKGDDRDFVSRILGPHAEHAITTLDDRCLITVSKNMLDMHDLIQQMGWEIIRQECPEDPGRRSRLWDSNANDVLIRNKGTRAIEGLFLDRCKFNPLQITTESFKEMNRLRLLNIHNPREDQLFLKDHLPRDFEFSSYELTYLHWDGYPLESLPMNFHAKNLVQLVLRGSNIKQVWRGNKLHDKLRVIDLSYSFHLIGIPDFSSVPNLEILILIGCVNLELLPRNIYKLKHLQILSCNGCSKLERFPEIKGNMRKLRVLDLSGTAIMDLPSSITHLNGLQTLLLQECSKLHKIPIHICHLSSLEVLDLGHCNIMEGGIPSDICHLSSLQKLNLERGHFSSIPTTINQLSSLEVLNLSHCNNLEQITELPSCLRLLDAHGSNRTSSRAPFLPLHSLVNCFRWAQDWKHTSFRDSSYHGKGTCIVLPGSDGIPEWILNRGDNFSSVIELPQNWHQNNEFLGFAICCVYVPLSDESEDIPEKESAHGPENESDNKSEDESTHSWENERDDKSVAESFHKNEHKHTHSCRLECFLGALGDSFDFQFVDRPGFQSTCFCYKEDKGEDNESVSGQTWVVCYSKAAIPEMFHSYQLTDILARFHIYSEKALKVKECGVRLIYSQDLQQSHEDADVRICRACRQDGTLRRKCCFKGSDMNEVPIIGNPLELDSLCLRDCKNLTSLPSSIFGFKSLATLSCSGCSQLESIPEILQDMESLRKLSLSGTAIKEIPSSIQRLRGLQYLLLSNCKNLVNLPESICNLTSLKFLIVESCPSFKKLPDNLGRLQSLLHLSVGPLDSMNFQLPSLSGLCSLRQLELQACNIREIPSEICYLSSLMPITVHPWKIYPVNQIYSGLLYSNVLNSKFRYGFHISFNLSFSIDKIQRVIFVQGREFRRSVRTFFAESNGIPEWISHQKSGFKITMKLPWSWYENDDFLGFVLCSLYVPLEIETKTHRIFSCILNFGDDSDSFLFDDLRLEQICECCYYEDASNQGLLVYYSKSDIPEKFHSNEWRTLNASFNVYFGIKPVKAARCGFHFLYAHDYEQNNLTMVQGKKL* 1334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10572518 10577689 - Vvi5g817 Vvi5g817 786959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g817 1333 Pfam NB-ARC domain 43 253 IPR002182 GO:0043531
Vvi5g817 1333 Gene3D - 188 272 IPR042197 -
Vvi5g817 1333 SMART LRR_typ_2 537 560 IPR003591 -
Vvi5g817 1333 SMART LRR_typ_2 1087 1110 IPR003591 -
Vvi5g817 1333 SMART LRR_typ_2 584 608 IPR003591 -
Vvi5g817 1333 SMART LRR_typ_2 992 1014 IPR003591 -
Vvi5g817 1333 SMART LRR_typ_2 1015 1039 IPR003591 -
Vvi5g817 1333 SMART LRR_typ_2 609 632 IPR003591 -
Vvi5g817 1333 Gene3D - 20 182 IPR027417 -
Vvi5g817 1333 Pfam C-JID domain 712 903 IPR045344 -
Vvi5g817 1333 Pfam C-JID domain 1182 1320 IPR045344 -
Vvi5g817 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 282 IPR027417 -
Vvi5g817 1333 MobiDBLite consensus disorder prediction 759 793 - -
Vvi5g817 1333 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 28 503 - -
Vvi5g817 1333 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 983 1061 - -
Vvi5g817 1333 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 950 1006 - -
Vvi5g817 1333 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 502 747 - -
Vvi5g817 1333 Gene3D Ribonuclease Inhibitor 535 682 IPR032675 -
Vvi5g817 1333 Gene3D Ribonuclease Inhibitor 366 534 IPR032675 -
Vvi5g817 1333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 503 IPR044974 GO:0006952
Vvi5g817 1333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 502 747 IPR044974 GO:0006952
Vvi5g817 1333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 950 1006 IPR044974 GO:0006952
Vvi5g817 1333 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 983 1061 IPR044974 GO:0006952
Vvi5g817 1333 SUPERFAMILY L domain-like 324 678 - -
Vvi5g817 1333 Gene3D Ribonuclease Inhibitor 925 1133 IPR032675 -
Vvi5g817 1333 PRINTS Disease resistance protein signature 55 70 - -
Vvi5g817 1333 PRINTS Disease resistance protein signature 130 144 - -
Vvi5g817 1333 PRINTS Disease resistance protein signature 223 237 - -
Vvi5g817 1333 PRINTS Disease resistance protein signature 630 646 - -
Vvi5g817 1333 ProSiteProfiles Leucine-rich repeat profile. 634 656 IPR001611 GO:0005515
Vvi5g817 1333 SUPERFAMILY L domain-like 931 1123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g817 - - - vvi:100852779 2561.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24