Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g818 ATGAGAAAATTAATTTCATACATGATGGAATGGAGAAAGGATCTTCCCCAACCAAAAGATGAAACTTTTCAGCTGAACCTCCCTCCCAGCTTGGATTTTTGTTCATGGGTGTGTAAACCTGGAGCTTCTTCCAGGAGGCATTTACAAGTTGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCATGGCCAATATGAGAAAGCTAAGGGTCTTCAAACTCTCCTACTTCAAGAGTGTTCAAAGCTCCACCAAATCCCTAGTCATATTTGCTATTTATCATCATTACAGAAACTAAATCTGGAAGGGGGCCATTTTAGTAGCATACCTCCTACCATCAATCAGCTTTCCAGGCTGAAAGCCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACAGCTTTTAGATGCACATGGTTCAAATCACACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGTTTCAGTTGGGCACAGGATTCGCAACTCACTAGTTTTAGTGATTCTTCCTACCATGGCAAGGGAACTTGCATTTTTCTTCCCGGAAGTGATGGAATTCCAGAATGGATTATGGGTCGGACAAATAGACATTTTACAAGAACAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTTGCTTACGAATCTGAGGACATACCCGAAAAAGAATCTGCTCACGGGTCCAAGATTGAATCAGACAATAAATCTGAGGATGAATCTGCTCATACAAGGGAGAATGAAACAGACCATAAATCTGTGGCTGAATCTTTTCGTAAGAATGAACATAAACATAGACATTCTTGTTGTCTGCAGTGTGATTTGGTTATCATTGGTGATGGAGTTGAATTGGTAGATCGTTCCTTGTTTCAATCCAATTGTTTTTGCTATAAAGAAGAGAAGGACGAAGATAATGAGAGTGTATCAGGTCAGACGTGGGTGATTTGCTATCCCAAGGCAGCCATTCCGGAAAGGTTTTGCTCTGATCAATGGACTCGCCTTAGGTTTGTCTTTTTCGACTTTTACGTTAATTCTGAGAAAGTCTTGAAAGTAAAGGAGTGTGGAGTCCGCCTTATATACTCCCAAGACCTTCAACAAAGCCATGAGGATGCAGATATTAGAATATGCAGGGCATGCCAACGGGATGGGACGCTTCGGCGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCAAGAATCCCTCGGAACTTGATAGTTTATGTCTGCGGGATTGCAGAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCTTTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTATTTAAATGGAACCGCCATAAAAGAGATACCATCATCAATTGAACGTCTAAGAGGGCTTCAATATTTGCTTCTGAGAAACTGCAAAAACCTTGTGAATCTTCCCGAGAGTATTTGTAATTTGACATCTTTTAAAACTCTGGTTGTCGAAAGCTGTCCAAACTTCAAGAAATTGCCAGACAACTTGGGGAGACTACAATCTTTACTTCATCTTAGTGTTGGGCATTTAGATTCAATGAATTTTCAATTGCCGTCTTTGTCCGGTTTATGCTCCTTGAGGACATTAAGGCTTAAAGGCTGCAATCTAAGGGAATTTCCCAGTGAAATTTATTACCTATCATCACTGGTAACATTATCTCTGAGGGGGAACCACTTTAGTCGCATACCTGATGGGATCAGTCAACTTTATAACCTAGAACATCTTGACTTGGGTCACTGCAAGATGCTTCAACATATTCCAGAACTTCCATCAGGTTTAAGGTGTCTAGATGCCCATCACTGCACATCCCTGGAAAATTTATCCAGTCAATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATCCCAAATTCAGGTATGGTTTTCATATATCATTTAA 2076 40.51 MRKLISYMMEWRKDLPQPKDETFQLNLPPSLDFCSWVCKPGASSRRHLQVETPSNFVLQWLFKAREISRNHGQYEKAKGLQTLLLQECSKLHQIPSHICYLSSLQKLNLEGGHFSSIPPTINQLSRLKALNLSHCNNLEQIPELPSRLQLLDAHGSNHTSSRAPFLPLHSLVNCFSWAQDSQLTSFSDSSYHGKGTCIFLPGSDGIPEWIMGRTNRHFTRTELPQNWHQNNEFLGFAICCVYVPLAYESEDIPEKESAHGSKIESDNKSEDESAHTRENETDHKSVAESFRKNEHKHRHSCCLQCDLVIIGDGVELVDRSLFQSNCFCYKEEKDEDNESVSGQTWVICYPKAAIPERFCSDQWTRLRFVFFDFYVNSEKVLKVKECGVRLIYSQDLQQSHEDADIRICRACQRDGTLRRKCCFKGSDMNEVPIIKNPSELDSLCLRDCRNLTSLPSSIFGFKSLATLSCSGCSQLESFPEILQDMESLRKLYLNGTAIKEIPSSIERLRGLQYLLLRNCKNLVNLPESICNLTSFKTLVVESCPNFKKLPDNLGRLQSLLHLSVGHLDSMNFQLPSLSGLCSLRTLRLKGCNLREFPSEIYYLSSLVTLSLRGNHFSRIPDGISQLYNLEHLDLGHCKMLQHIPELPSGLRCLDAHHCTSLENLSSQSNLLWSSLFKCFKSQIQVWFSYII* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10611366 10626517 - Vvi5g818 Vvi5g818 786960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g818 691 SUPERFAMILY L domain-like 419 670 - -
Vvi5g818 691 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Vvi5g818 691 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 425 674 - -
Vvi5g818 691 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 78 368 - -
Vvi5g818 691 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Vvi5g818 691 Gene3D Ribonuclease Inhibitor 416 687 IPR032675 -
Vvi5g818 691 MobiDBLite consensus disorder prediction 253 286 - -
Vvi5g818 691 Pfam C-JID domain 204 396 IPR045344 -
Vvi5g818 691 PANTHER LEUCINE-RICH REPEAT-CONTAINING 78 368 - -
Vvi5g818 691 PANTHER LEUCINE-RICH REPEAT-CONTAINING 425 674 - -
Vvi5g818 691 Pfam Leucine rich repeat 582 638 IPR001611 GO:0005515
Vvi5g818 691 SMART LRR_typ_2 603 626 IPR003591 -
Vvi5g818 691 SMART LRR_typ_2 580 602 IPR003591 -
Vvi5g818 691 SMART LRR_typ_2 485 508 IPR003591 -
Vvi5g818 691 SMART LRR_typ_2 101 124 IPR003591 -
Vvi5g818 691 SUPERFAMILY L domain-like 75 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g818 - - - vvi:100247669 1083.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g818 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24