Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g819 ATGAACACTAAGTTAAATATGGTTAGCGTCGTAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATTGCCAAGGCTATTTATAATGAGACCTCAGATCAATATGATGGTAGGAGCTTTCTTAGAAATATCAGAGAGCGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAAAATTTTAAAATAAACAATGTTGATGAAGGAATTAGTATGATAAAGAGGTGTCTAACCTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAAGATTGGTTTCATGCAAAAAGTACAATCATCATTACAACTAGAGACAAACACGTGCTTGCTCAATATGGAGCGGATATACCATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTACTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAACCTCTCATACAATATCATAGATTATGCTAATGGCCTTCCGTTAGCACTTAAAGTTATAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTCATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATACCCCACAAGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTCGATGATATAGACAAGGGGATGTTTTTGGATGTAGCATGCTTTTTCAAAGGAGATGACAAAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAGAGCATGTAATAACAACTCTAGCTGATAGATGTCTTATAACTATTTCAAAAAACATGCTAGATATGCATGATTTAATACAACTAATGGGTTGGGAGGTTATTCGTCAAGAATGTCCTGAAGACCCTGGAAGAAGGAGTAGATTGTGGGATTCTAATGCCTATCACGTGCTAATAGGAAATACGGGGACAAGAGCAATTGAAGGACTATTCCTAGATAGATGTAAATTTAATCTATCACAGCTTACTACAAAATCTTTCAAAGAGATGAATAGACTTCGATTGCTCAAAATCCATAACCCTCGCAGAAAGTTATTTCTTGAAGACCACCTTCCAAGGGACTTTGAATTCTCTTCTTATGAGTTAACATATCTGCATTGGGATCGATACCCTTTAGAATCTTTGCCATTGAATTTTCATGCAAAGAACCTTGTTGAACTCTTACTGAGGAACAGCAATATAAAGCAACTTTGGAGAGGGAATAAGGTATTGCTATTATTATTTAGTTACAACTTCTCAAGTGTGCCAAACTTGGAGATTCTAACTCTAGAAGGATGTGTAAACCTGGAGCGTCTTCCAAGAGGCATTTACAAGTGGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAGGGCAATATGAGAGAGCTAAGGGTGCTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTGCAAAGCTCCACAAAATCCCTATTCATATTTGCCACTTATCATCATTGGAAGTATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACGGGGTCATTTTAGTAGCATACCTACTACCATCAATCAGCTTTCCAGGCTGGAAGTCCTTAACCTTAGTCACTGCAGCAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACGGCTTTTAGATGCACACGGTTCAAATCGCACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCAGTCGAGTACAGGATTCGAAACGCACTAGTTTTAGTGATTCTTTCTACCATGGCAAGGGAACTTGCATTTTTCTTCCCGGAGGACATACCCGAAAAGGAATCTGCACATGGGTCCGAGAATGA 1998 37.99 MNTKLNMVSVVGIYGIGGVGKTTIAKAIYNETSDQYDGRSFLRNIRERSKGDILQLQQELLHGILRGKNFKINNVDEGISMIKRCLTSNRVLVIFDDVDELKQLEYLAEEKDWFHAKSTIIITTRDKHVLAQYGADIPYEVSKLNKEEATELFSLWAFKQNRPQEVYKNLSYNIIDYANGLPLALKVIGASLFGKKISHWESALCKLKIIPHKEIHNVLRISFDGLDDIDKGMFLDVACFFKGDDKDFVSRILGPHAEHVITTLADRCLITISKNMLDMHDLIQLMGWEVIRQECPEDPGRRSRLWDSNAYHVLIGNTGTRAIEGLFLDRCKFNLSQLTTKSFKEMNRLRLLKIHNPRRKLFLEDHLPRDFEFSSYELTYLHWDRYPLESLPLNFHAKNLVELLLRNSNIKQLWRGNKVLLLLFSYNFSSVPNLEILTLEGCVNLERLPRGIYKWKHLQTLSCNGCSKLERFPEIKGNMRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECAKLHKIPIHICHLSSLEVLDLGHCNIMEGGIPSDICHLSSLQKLNLERGHFSSIPTTINQLSRLEVLNLSHCSNLEQIPELPSRLRLLDAHGSNRTSSRAPFLPLHSLVNCFSRVQDSKRTSFSDSFYHGKGTCIFLPGGHTRKGICTWVRE* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10628175 10632064 - Vvi5g819 Vvi5g819 786961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g819 665 Gene3D - 143 227 IPR042197 -
Vvi5g819 665 SUPERFAMILY L domain-like 291 621 - -
Vvi5g819 665 SMART LRR_typ_2 551 574 IPR003591 -
Vvi5g819 665 SMART LRR_typ_2 431 455 IPR003591 -
Vvi5g819 665 SMART LRR_typ_2 479 502 IPR003591 -
Vvi5g819 665 SMART LRR_typ_2 526 550 IPR003591 -
Vvi5g819 665 Pfam NB-ARC domain 9 208 IPR002182 GO:0043531
Vvi5g819 665 PRINTS Disease resistance protein signature 10 25 - -
Vvi5g819 665 PRINTS Disease resistance protein signature 85 99 - -
Vvi5g819 665 PRINTS Disease resistance protein signature 178 192 - -
Vvi5g819 665 PRINTS Disease resistance protein signature 572 588 - -
Vvi5g819 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 494 IPR044974 GO:0006952
Vvi5g819 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 433 606 IPR044974 GO:0006952
Vvi5g819 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 236 IPR027417 -
Vvi5g819 665 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 433 606 - -
Vvi5g819 665 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 494 - -
Vvi5g819 665 Gene3D - 1 136 IPR027417 -
Vvi5g819 665 Gene3D Ribonuclease Inhibitor 320 477 IPR032675 -
Vvi5g819 665 Gene3D Ribonuclease Inhibitor 478 629 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g819 - - - vvi:100247669 1175.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24