Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g822 ATGATTGGCAGGTATGAGACCGAGGTTGTCAAGGAAATTGTTGATACAATCATTAGAAGATTAAACCATCAACCTTTAAGTGTGGGAAAGAACATAGTTGGAATTGGTGTTCATTTGGAAAAATTGAAATCGTTGATGAACACTGAGTTAAATATGGTTAGTGTCGTAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATCGCCAAGGCTATTTATAATGAGATCTCACATCAATATGATGGTAGTAGCTTTCTTATAAATATCAAAGAGAGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAAAATTTTAAAATAAACAATGTTGATGAAGGAATTAGTATGATAAAGAGGTGTCTAAGCTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAGGATTGGTTTCGGGCAAAAAGTACAATCATCATTACATCTAGAGACAAACATGTACTTGCTCAATATGGAGCGGATATACGATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTATTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAATCTCTCATACAATATCATAGATTATGCTAATGGCCTTCCGTTAGCACTTAAAGTTTTAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTAATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATGCCCCACATGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTCGATGATATAGACAAGGGGATATTTTTGGATGTTGCATGCTTTTTCAAAGGAGATGATAGAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAAAGCACGCAATAACAACTCTAGATGATAGATGTCTCATAACTGTTTCAAAAAACATGCTAGATATGCATGATTTAATACAACAAATGGGTTGGGAGATTATTCGTCAAGAATGTCCGGAAGACCCTGGAAGAAGGAGTAGATTATGCGATTCTAATGCCTATCATGTGCTAACAGGAAATAAGGGGACACGAGCAATTGAAGGACTATTCTTAGATAGATGTAAATTTAATCCATCAGAGCTTACTACAGAATCTTTCAAAGAGATGAATAGACTTAGACTGCTCAAAATCCATAACCCTCGTAGAAAGCTATTTCTTAAAGACCACCTTCCAAGGGACTTTGAATTCTATTCCTATGAGTTAGCATATCTGCATTGGGATGGATACCCTTTAGAATCTTTGCCAATGAATTTTCATGCAAAGAACCTTGTTGAACTCTCATTAAGGGACAGCAATATAAAGCAAGTTTGGAGGGGCAATAAGGTATTGTTATTATTATTTAGTTACAACTTCTCAAGTGTGCCAAACTTGGAGATTCTAACTCTAGAAGGGTGTGTAAACCTGGAGCTTCTTCCAAGAGGCATTTACAAGTGGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAAGGCGATATGAGAGAGCTAAGGGTGCTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTTTAAAGCTCCACCAAATCCCTAATCATATTTGCCATTTATCATCATTGAAAGAATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACAGGGTCATTTTAGTAGCATACCTACTACCATCAATCAGCTTTCCAGGCTGGAAGTCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACGGCTTTTAGATGCACATGGTTCAAATCGCACTTCATCAAGAGCCCTGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCAGTTGGGCACAGGGTTTGAAACGCACTAGTTTTAGTGATTCTTCCTACCGTGGCAAGGGAACTTGCATTGTTCTTCCCAGAACTGATGGAATTCCAGAATGGATTATGGATCGGACAAAAAGATATTTTACAGAAACAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTCTATGTTGTGTTTATGTTCCATTTGCTTACGAATCTGAGGACATACCTGAAAAGGAATCTGCACACGGGTCCAAGAATGAATCAGCTAATAAATCTGAGGATGAATCTGCTCATACATGGGAGAATGAAACAGACGATAAATCTGTGGCTGAATCTTTTCGTAAGAATGAACATAAACATACACATCCTTGTCGTCTTAGCTGTTGTTTGGATGTGGCTGGTGATGGAGTTGAATTGGTAGATCGTTCCTTCTTTCAATCCAATTGTTTTTGCTATAAAAAAGACAAGGACGAAGATAATGAGAGTGTATCAGGTCAGACGTGGGTGATTTGCTATCCCAAGGCAGTTATTCCGGAAAGGTTTTGCTCTGATCAACGGACTTTCATTGGGTTTTCCTTTTTCGACTTTTACATTAATTCTGAGAAAGTCTTGAAAGTAAAGGAGTGTGGAGTCCGCCTTATATACTCCCAAGACCTTCAACAAAGCCATGAGGATGCAGATATTAGAATATGCAGGGCATGCCAACGGGATGGGACACCTCGGCGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCGAGAATCCCTTGGAACTTGATAGTTTATGTCTGCGGGATTGCAGAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCTTTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTATTTAAATGGAACCGCCATAAAAGAGATACCATCATCAATTCAACGTCTAAGAGGGCTTCAATATTTGCTTCTGAGAAACTGCAAAAACCTTGTGAATCTTCCTGAGAGTATTTGTAATTTGACATCTTTTAAAACTCTCGTTGTCAGTCGCTGTCCAAACTTCAACAAATTGCCAGACAACTTGGGGAGACTGCAATCTTTAGAGTATCTTTTTGTTGGGCATTTAGATTCAATGAATTTTCAATTGCCGTCTTTGTCCGGTTTATGCTCCTTGAGGACGTTAAAGCTTCAAGGCTGCAATCTAAGGGAATTTCCCAGTGAAATCTATTACCTATCATCACTGGTAACATTATCTCTGGGGGGGAACCACTTTAGTCGCATACCTGATGGGATCAGTCAACTTTATAACCTAGAAAATCTTTACTTGGGTCACTGCAAGATGCTTCAACATATTCCAGAACTTCCATCAGGTTTATTTTGTCTAGATGCCCATCACTGCACATCCCTGGAAAATTTATCCAGTCGATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATCCCAAATTCAGGTATGGTTTTCATATAGCATTTAA 3561 38.3 MIGRYETEVVKEIVDTIIRRLNHQPLSVGKNIVGIGVHLEKLKSLMNTELNMVSVVGIYGIGGVGKTTIAKAIYNEISHQYDGSSFLINIKERSKGDILQLQQELLHGILRGKNFKINNVDEGISMIKRCLSSNRVLVIFDDVDELKQLEYLAEEKDWFRAKSTIIITSRDKHVLAQYGADIRYEVSKLNKEEAIELFSLWAFKQNRPQEVYKNLSYNIIDYANGLPLALKVLGASLFGKKISNWESALCKLKIMPHMEIHNVLRISFDGLDDIDKGIFLDVACFFKGDDRDFVSRILGPHAKHAITTLDDRCLITVSKNMLDMHDLIQQMGWEIIRQECPEDPGRRSRLCDSNAYHVLTGNKGTRAIEGLFLDRCKFNPSELTTESFKEMNRLRLLKIHNPRRKLFLKDHLPRDFEFYSYELAYLHWDGYPLESLPMNFHAKNLVELSLRDSNIKQVWRGNKVLLLLFSYNFSSVPNLEILTLEGCVNLELLPRGIYKWKHLQTLSCNGCSKLERFPEIKGDMRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCNIMEGGIPSDICHLSSLQKLNLEQGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRLRLLDAHGSNRTSSRALFLPLHSLVNCFSWAQGLKRTSFSDSSYRGKGTCIVLPRTDGIPEWIMDRTKRYFTETELPQNWHQNNEFLGFALCCVYVPFAYESEDIPEKESAHGSKNESANKSEDESAHTWENETDDKSVAESFRKNEHKHTHPCRLSCCLDVAGDGVELVDRSFFQSNCFCYKKDKDEDNESVSGQTWVICYPKAVIPERFCSDQRTFIGFSFFDFYINSEKVLKVKECGVRLIYSQDLQQSHEDADIRICRACQRDGTPRRKCCFKGSDMNEVPIIENPLELDSLCLRDCRNLTSLPSSIFGFKSLATLSCSGCSQLESFPEILQDMESLRKLYLNGTAIKEIPSSIQRLRGLQYLLLRNCKNLVNLPESICNLTSFKTLVVSRCPNFNKLPDNLGRLQSLEYLFVGHLDSMNFQLPSLSGLCSLRTLKLQGCNLREFPSEIYYLSSLVTLSLGGNHFSRIPDGISQLYNLENLYLGHCKMLQHIPELPSGLFCLDAHHCTSLENLSSRSNLLWSSLFKCFKSQIQVWFSYSI* 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10720369 10724976 - Vvi5g822 Vvi5g822 786964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g822 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 281 IPR027417 -
Vvi5g822 1186 Gene3D - 20 184 IPR027417 -
Vvi5g822 1186 Gene3D Ribonuclease Inhibitor 979 1179 IPR032675 -
Vvi5g822 1186 Gene3D Ribonuclease Inhibitor 365 521 IPR032675 -
Vvi5g822 1186 Gene3D Ribonuclease Inhibitor 522 672 IPR032675 -
Vvi5g822 1186 Gene3D Ribonuclease Inhibitor 917 978 IPR032675 -
Vvi5g822 1186 ProSiteProfiles Leucine-rich repeat profile. 621 643 IPR001611 GO:0005515
Vvi5g822 1186 SUPERFAMILY L domain-like 930 1161 - -
Vvi5g822 1186 Pfam NB-ARC domain 43 253 IPR002182 GO:0043531
Vvi5g822 1186 PRINTS Disease resistance protein signature 55 70 - -
Vvi5g822 1186 PRINTS Disease resistance protein signature 130 144 - -
Vvi5g822 1186 PRINTS Disease resistance protein signature 223 237 - -
Vvi5g822 1186 PRINTS Disease resistance protein signature 617 633 - -
Vvi5g822 1186 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 478 652 - -
Vvi5g822 1186 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1071 1161 - -
Vvi5g822 1186 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 27 490 - -
Vvi5g822 1186 Gene3D - 188 272 IPR042197 -
Vvi5g822 1186 SUPERFAMILY Winged helix DNA-binding domain 259 340 IPR036390 -
Vvi5g822 1186 Pfam C-JID domain 700 891 IPR045344 -
Vvi5g822 1186 SUPERFAMILY L domain-like 338 667 - -
Vvi5g822 1186 SMART LRR_typ_2 980 1003 IPR003591 -
Vvi5g822 1186 SMART LRR_typ_2 1098 1121 IPR003591 -
Vvi5g822 1186 SMART LRR_typ_2 524 547 IPR003591 -
Vvi5g822 1186 SMART LRR_typ_2 619 642 IPR003591 -
Vvi5g822 1186 SMART LRR_typ_2 1075 1097 IPR003591 -
Vvi5g822 1186 SMART LRR_typ_2 571 596 IPR003591 -
Vvi5g822 1186 MobiDBLite consensus disorder prediction 749 777 - -
Vvi5g822 1186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 490 IPR044974 GO:0006952
Vvi5g822 1186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 478 652 IPR044974 GO:0006952
Vvi5g822 1186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1071 1161 IPR044974 GO:0006952
Vvi5g822 1186 SMART AAA_5 52 190 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g822 - - - vvi:100247669 2328.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24